Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3456 and GFF3457 are separated by 49 nucleotides GFF3457 and GFF3458 overlap by 4 nucleotides GFF3458 and GFF3459 overlap by 4 nucleotides
GFF3456 - Possible regulatory protein similar to urea ABC transporter, substrate binding protein, at 277,541 to 278,695
GFF3456
GFF3457 - Nitric oxide reductase activation protein NorD, at 278,745 to 280,397
GFF3457
GFF3458 - Rubisco activation protein CbbQ, at 280,394 to 281,212
GFF3458
GFF3459 - Aliphatic amidase AmiE (EC 3.5.1.4), at 281,209 to 282,246
GFF3459
Position (kb) 278
279
280
281 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 277.827 kb on + strand, within GFF3456 at 277.828 kb on - strand, within GFF3456 at 278.046 kb on + strand, within GFF3456 at 278.047 kb on - strand, within GFF3456 at 278.169 kb on + strand, within GFF3456 at 278.250 kb on + strand, within GFF3456 at 278.251 kb on - strand, within GFF3456 at 278.251 kb on - strand, within GFF3456 at 278.269 kb on - strand, within GFF3456 at 278.344 kb on - strand, within GFF3456 at 278.362 kb on - strand, within GFF3456 at 278.376 kb on + strand, within GFF3456 at 278.377 kb on - strand, within GFF3456 at 278.377 kb on - strand, within GFF3456 at 278.451 kb on + strand, within GFF3456 at 278.452 kb on - strand, within GFF3456 at 278.452 kb on - strand, within GFF3456 at 278.675 kb on + strand at 278.726 kb on + strand at 278.726 kb on + strand at 278.726 kb on + strand at 278.726 kb on + strand at 278.822 kb on - strand at 278.851 kb on + strand at 278.851 kb on + strand at 278.852 kb on - strand at 278.944 kb on + strand, within GFF3457 at 279.145 kb on + strand, within GFF3457 at 279.145 kb on + strand, within GFF3457 at 279.146 kb on - strand, within GFF3457 at 279.149 kb on - strand, within GFF3457 at 279.149 kb on - strand, within GFF3457 at 279.149 kb on - strand, within GFF3457 at 279.149 kb on - strand, within GFF3457 at 279.149 kb on - strand, within GFF3457 at 279.151 kb on + strand, within GFF3457 at 279.151 kb on + strand, within GFF3457 at 279.151 kb on + strand, within GFF3457 at 279.152 kb on - strand, within GFF3457 at 279.152 kb on - strand, within GFF3457 at 279.152 kb on - strand, within GFF3457 at 279.152 kb on - strand, within GFF3457 at 279.152 kb on - strand, within GFF3457 at 279.152 kb on - strand, within GFF3457 at 279.152 kb on - strand, within GFF3457 at 279.152 kb on - strand, within GFF3457 at 279.781 kb on + strand, within GFF3457 at 279.781 kb on + strand, within GFF3457 at 279.781 kb on + strand, within GFF3457 at 279.782 kb on - strand, within GFF3457 at 279.782 kb on - strand, within GFF3457 at 279.817 kb on + strand, within GFF3457 at 279.818 kb on - strand, within GFF3457 at 279.895 kb on + strand, within GFF3457 at 279.896 kb on - strand, within GFF3457 at 280.525 kb on - strand, within GFF3458 at 280.752 kb on + strand, within GFF3458 at 280.753 kb on - strand, within GFF3458 at 280.817 kb on + strand, within GFF3458 at 280.817 kb on + strand, within GFF3458 at 280.817 kb on + strand, within GFF3458 at 280.890 kb on + strand, within GFF3458
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 277,827 + GFF3456 0.25 +1.5 277,828 - GFF3456 0.25 +0.0 278,046 + GFF3456 0.44 -0.0 278,047 - GFF3456 0.44 -0.1 278,169 + GFF3456 0.54 -0.0 278,250 + GFF3456 0.61 +0.5 278,251 - GFF3456 0.61 +0.2 278,251 - GFF3456 0.61 +0.5 278,269 - GFF3456 0.63 +0.5 278,344 - GFF3456 0.70 -0.5 278,362 - GFF3456 0.71 -0.8 278,376 + GFF3456 0.72 +0.2 278,377 - GFF3456 0.72 -0.2 278,377 - GFF3456 0.72 +0.1 278,451 + GFF3456 0.79 +0.5 278,452 - GFF3456 0.79 -0.1 278,452 - GFF3456 0.79 -0.3 278,675 + +0.9 278,726 + -0.1 278,726 + +0.3 278,726 + -0.2 278,726 + +0.4 278,822 - +0.4 278,851 + -0.9 278,851 + -0.8 278,852 - -1.7 278,944 + GFF3457 0.12 -1.0 279,145 + GFF3457 0.24 -0.2 279,145 + GFF3457 0.24 -0.9 279,146 - GFF3457 0.24 -0.1 279,149 - GFF3457 0.24 -1.3 279,149 - GFF3457 0.24 -1.7 279,149 - GFF3457 0.24 -0.1 279,149 - GFF3457 0.24 -2.3 279,149 - GFF3457 0.24 -0.7 279,151 + GFF3457 0.25 -1.0 279,151 + GFF3457 0.25 +0.6 279,151 + GFF3457 0.25 -0.9 279,152 - GFF3457 0.25 -0.4 279,152 - GFF3457 0.25 -1.0 279,152 - GFF3457 0.25 -0.1 279,152 - GFF3457 0.25 -0.9 279,152 - GFF3457 0.25 -1.0 279,152 - GFF3457 0.25 -0.4 279,152 - GFF3457 0.25 -0.5 279,152 - GFF3457 0.25 -0.5 279,781 + GFF3457 0.63 +0.4 279,781 + GFF3457 0.63 -0.2 279,781 + GFF3457 0.63 +3.5 279,782 - GFF3457 0.63 +0.1 279,782 - GFF3457 0.63 -1.1 279,817 + GFF3457 0.65 -1.2 279,818 - GFF3457 0.65 -0.2 279,895 + GFF3457 0.70 -0.6 279,896 - GFF3457 0.70 -2.4 280,525 - GFF3458 0.16 -0.3 280,752 + GFF3458 0.44 -0.8 280,753 - GFF3458 0.44 -0.2 280,817 + GFF3458 0.52 +0.5 280,817 + GFF3458 0.52 -0.9 280,817 + GFF3458 0.52 +1.1 280,890 + GFF3458 0.61 -1.9
Or see this region's nucleotide sequence