Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3389 and GFF3390 are separated by 11 nucleotides GFF3390 and GFF3391 are separated by 139 nucleotides
GFF3389 - Glycosyl transferases, related to UDP-glucuronosyltransferase, at 209,906 to 211,126
GFF3389
GFF3390 - Transcriptional activator of acetoin dehydrogenase operon AcoR, at 211,138 to 213,063
GFF3390
GFF3391 - Chlorogenate esterase, at 213,203 to 215,116
GFF3391
Position (kb) 211
212
213
214 Strain fitness (log2 ratio) -1
0
1
2 at 210.491 kb on + strand, within GFF3389 at 210.635 kb on + strand, within GFF3389 at 210.636 kb on - strand, within GFF3389 at 210.725 kb on + strand, within GFF3389 at 210.725 kb on + strand, within GFF3389 at 210.726 kb on - strand, within GFF3389 at 211.207 kb on + strand at 211.207 kb on + strand at 211.207 kb on + strand at 211.207 kb on + strand at 211.207 kb on + strand at 211.207 kb on + strand at 211.208 kb on - strand at 211.208 kb on - strand at 211.208 kb on - strand at 211.208 kb on - strand at 211.518 kb on - strand, within GFF3390 at 211.518 kb on - strand, within GFF3390 at 211.580 kb on + strand, within GFF3390 at 211.580 kb on + strand, within GFF3390 at 211.581 kb on - strand, within GFF3390 at 212.465 kb on + strand, within GFF3390 at 212.465 kb on + strand, within GFF3390 at 212.466 kb on - strand, within GFF3390 at 212.466 kb on - strand, within GFF3390 at 212.466 kb on - strand, within GFF3390 at 212.466 kb on - strand, within GFF3390 at 212.711 kb on + strand, within GFF3390 at 212.712 kb on - strand, within GFF3390 at 212.712 kb on - strand, within GFF3390 at 212.712 kb on - strand, within GFF3390 at 212.712 kb on - strand, within GFF3390 at 212.759 kb on + strand, within GFF3390 at 212.759 kb on + strand, within GFF3390 at 212.760 kb on - strand, within GFF3390 at 212.760 kb on - strand, within GFF3390 at 212.801 kb on + strand, within GFF3390 at 212.801 kb on + strand, within GFF3390 at 212.801 kb on + strand, within GFF3390 at 212.801 kb on + strand, within GFF3390 at 212.801 kb on + strand, within GFF3390 at 212.801 kb on + strand, within GFF3390 at 212.801 kb on + strand, within GFF3390 at 212.802 kb on - strand, within GFF3390 at 212.825 kb on + strand, within GFF3390 at 212.825 kb on + strand, within GFF3390 at 212.825 kb on + strand, within GFF3390 at 212.825 kb on + strand, within GFF3390 at 212.826 kb on - strand, within GFF3390 at 213.026 kb on + strand at 213.026 kb on + strand at 213.027 kb on - strand at 213.027 kb on - strand at 213.216 kb on + strand at 213.216 kb on + strand at 213.217 kb on - strand at 213.217 kb on - strand at 213.267 kb on + strand at 213.472 kb on - strand, within GFF3391 at 213.477 kb on + strand, within GFF3391 at 213.528 kb on + strand, within GFF3391 at 213.528 kb on + strand, within GFF3391 at 213.529 kb on - strand, within GFF3391 at 213.529 kb on - strand, within GFF3391 at 213.531 kb on + strand, within GFF3391 at 213.531 kb on + strand, within GFF3391 at 213.532 kb on - strand, within GFF3391 at 213.532 kb on - strand, within GFF3391 at 213.579 kb on + strand, within GFF3391 at 213.579 kb on + strand, within GFF3391 at 213.580 kb on - strand, within GFF3391 at 213.699 kb on + strand, within GFF3391 at 213.699 kb on + strand, within GFF3391 at 213.700 kb on - strand, within GFF3391 at 213.700 kb on - strand, within GFF3391 at 213.700 kb on - strand, within GFF3391 at 213.981 kb on + strand, within GFF3391
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 210,491 + GFF3389 0.48 -0.9 210,635 + GFF3389 0.60 -0.7 210,636 - GFF3389 0.60 +0.1 210,725 + GFF3389 0.67 +0.3 210,725 + GFF3389 0.67 -1.5 210,726 - GFF3389 0.67 +0.1 211,207 + -0.3 211,207 + -0.2 211,207 + +0.3 211,207 + -0.0 211,207 + -1.0 211,207 + -0.7 211,208 - -0.0 211,208 - +0.9 211,208 - -0.3 211,208 - -0.3 211,518 - GFF3390 0.20 +0.6 211,518 - GFF3390 0.20 -0.3 211,580 + GFF3390 0.23 -0.1 211,580 + GFF3390 0.23 -0.6 211,581 - GFF3390 0.23 +0.1 212,465 + GFF3390 0.69 +0.0 212,465 + GFF3390 0.69 -0.7 212,466 - GFF3390 0.69 -0.4 212,466 - GFF3390 0.69 +1.0 212,466 - GFF3390 0.69 -0.1 212,466 - GFF3390 0.69 -0.2 212,711 + GFF3390 0.82 +1.5 212,712 - GFF3390 0.82 -1.5 212,712 - GFF3390 0.82 -0.3 212,712 - GFF3390 0.82 -0.1 212,712 - GFF3390 0.82 +0.3 212,759 + GFF3390 0.84 -0.4 212,759 + GFF3390 0.84 -0.9 212,760 - GFF3390 0.84 -0.2 212,760 - GFF3390 0.84 -0.3 212,801 + GFF3390 0.86 -0.1 212,801 + GFF3390 0.86 -0.0 212,801 + GFF3390 0.86 +0.0 212,801 + GFF3390 0.86 -0.0 212,801 + GFF3390 0.86 +0.3 212,801 + GFF3390 0.86 -0.5 212,801 + GFF3390 0.86 -0.3 212,802 - GFF3390 0.86 -1.2 212,825 + GFF3390 0.88 +0.2 212,825 + GFF3390 0.88 -0.6 212,825 + GFF3390 0.88 +0.9 212,825 + GFF3390 0.88 +1.1 212,826 - GFF3390 0.88 +0.0 213,026 + +1.2 213,026 + +1.9 213,027 - +0.4 213,027 - -0.1 213,216 + -0.8 213,216 + -0.3 213,217 - +0.7 213,217 - -0.6 213,267 + -0.5 213,472 - GFF3391 0.14 -0.4 213,477 + GFF3391 0.14 +0.5 213,528 + GFF3391 0.17 -0.1 213,528 + GFF3391 0.17 -0.1 213,529 - GFF3391 0.17 -0.1 213,529 - GFF3391 0.17 +0.0 213,531 + GFF3391 0.17 -0.3 213,531 + GFF3391 0.17 +0.2 213,532 - GFF3391 0.17 -0.2 213,532 - GFF3391 0.17 +0.5 213,579 + GFF3391 0.20 -1.6 213,579 + GFF3391 0.20 -0.5 213,580 - GFF3391 0.20 -0.2 213,699 + GFF3391 0.26 -0.1 213,699 + GFF3391 0.26 -0.7 213,700 - GFF3391 0.26 -0.4 213,700 - GFF3391 0.26 -0.2 213,700 - GFF3391 0.26 +0.9 213,981 + GFF3391 0.41 +0.1
Or see this region's nucleotide sequence