Strain Fitness in Variovorax sp. SCN45 around GFF3316

Experiment: Community=Kojac gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=1
141,983	+		GFF3314	0.48	-0.1
142,079	+		GFF3314	0.58	+0.9
142,079	+		GFF3314	0.58	+1.5
142,079	+		GFF3314	0.58	-0.1
142,079	+		GFF3314	0.58	-1.0
142,097	+		GFF3314	0.60	-0.1
142,097	+		GFF3314	0.60	-0.4
142,097	+		GFF3314	0.60	+0.7
142,097	+		GFF3314	0.60	+0.0
142,097	+		GFF3314	0.60	+0.4
142,097	+		GFF3314	0.60	-0.6
142,098	-		GFF3314	0.60	+0.5
142,098	-		GFF3314	0.60	+0.3
142,098	-		GFF3314	0.60	+0.6
142,098	-		GFF3314	0.60	-0.8
142,098	-		GFF3314	0.60	-0.4
142,098	-		GFF3314	0.60	-1.5
142,098	-		GFF3314	0.60	+0.3
142,169	+		GFF3314	0.68	-0.4
142,169	+		GFF3314	0.68	+1.1
142,170	-		GFF3314	0.68	-0.1
142,170	-		GFF3314	0.68	+0.5
142,170	-		GFF3314	0.68	+0.5
142,170	-		GFF3314	0.68	+1.1
142,170	-		GFF3314	0.68	-0.3
142,170	-		GFF3314	0.68	-0.4
142,286	+		GFF3314	0.80	+0.1
142,286	+		GFF3314	0.80	-0.6
142,286	+		GFF3314	0.80	+1.5
142,286	+		GFF3314	0.80	-0.0
142,286	+		GFF3314	0.80	-0.1
142,286	+		GFF3314	0.80	+0.6
142,286	+		GFF3314	0.80	-0.5
142,286	+		GFF3314	0.80	-0.8
142,286	+		GFF3314	0.80	-0.9
142,287	-		GFF3314	0.80	+0.7
142,287	-		GFF3314	0.80	+0.1
142,287	-		GFF3314	0.80	-0.0
142,287	-		GFF3314	0.80	-2.1
142,287	-		GFF3314	0.80	-2.0
142,287	-		GFF3314	0.80	-0.4
142,313	+		GFF3314	0.83	-2.1
142,313	+		GFF3314	0.83	-1.4
142,313	+		GFF3314	0.83	-1.5
142,313	+		GFF3314	0.83	-0.3
142,313	+		GFF3314	0.83	+0.9
142,314	-		GFF3314	0.83	-2.7
142,314	-		GFF3314	0.83	+0.1
142,314	-		GFF3314	0.83	-0.6
142,316	+		GFF3314	0.83	-0.5
142,316	+		GFF3314	0.83	+0.1
142,317	-		GFF3314	0.83	-0.8
142,317	-		GFF3314	0.83	-0.0
142,403	+				-0.1
142,403	+				-0.7
142,404	-				-0.7
142,404	-				-0.4
142,584	+				+0.2
142,584	+				-0.1
142,584	+				-0.1
142,584	+				-0.0
142,584	+				-0.1
142,584	+				-0.6
142,584	+				-0.5
142,584	+				+3.2
142,584	+				-0.5
142,584	+				+0.9
142,588	+				+0.3
142,588	+				-1.7
142,588	+				+0.0
142,588	+				+0.6
142,588	+				+0.1
142,588	+				-0.5
142,588	+				-1.1
142,588	+				-1.1
142,588	+				-0.4
142,588	+				-0.1
142,588	+				+0.9
142,588	+				+0.6
142,588	+				-0.8
142,589	-				-0.8
142,589	-				+1.2
142,589	-				-0.9
142,589	-				-0.2
142,589	-				-0.1
142,589	-				-0.6
142,589	-				-0.5
142,589	-				-0.2
142,589	-				-0.3
142,589	-				+0.3
142,589	-				-0.5
142,589	-				+1.1
142,589	-				+0.2
142,589	-				+0.9
142,589	-				-0.1
142,589	-				+0.6
142,589	-				-0.5
142,838	+		GFF3315	0.63	-0.7
142,838	+		GFF3315	0.63	+0.2
142,838	+		GFF3315	0.63	-0.2
142,838	+		GFF3315	0.63	-0.0
142,838	+		GFF3315	0.63	-0.3
142,838	+		GFF3315	0.63	-0.9
142,839	-		GFF3315	0.63	-0.9
142,839	-		GFF3315	0.63	-0.9
142,839	-		GFF3315	0.63	-0.2
142,839	-		GFF3315	0.63	-0.6
142,839	-		GFF3315	0.63	-0.4
142,915	+		GFF3315	0.82	+0.0
142,915	+		GFF3315	0.82	-1.1
142,915	+		GFF3315	0.82	-2.1
142,915	+		GFF3315	0.82	+1.1
142,915	+		GFF3315	0.82	-1.1
142,915	+		GFF3315	0.82	-0.4
142,915	+		GFF3315	0.82	+0.9
142,916	-		GFF3315	0.82	-0.7
142,916	-		GFF3315	0.82	+0.1
142,998	+				+0.3
142,998	+				-0.0
142,998	+				-0.7
142,998	+				+0.4
142,998	+				+0.4
142,998	+				-0.8
143,221	+				-0.1
143,221	+				+0.3
143,221	+				-1.5
143,221	+				-0.9
143,221	+				-1.9
143,221	+				-0.4
143,221	+				-2.2
143,221	+				-0.1
143,222	-				-0.1
143,222	-				-1.9
143,222	-				-1.4
143,222	-				-0.9
143,532	-				+0.4
143,742	-		GFF3317	0.19	-0.1
143,894	+		GFF3317	0.26	-0.8
143,894	+		GFF3317	0.26	-0.2
143,894	+		GFF3317	0.26	-0.9
143,894	+		GFF3317	0.26	+0.0
143,895	-		GFF3317	0.26	-0.6
143,895	-		GFF3317	0.26	-1.1