Strain Fitness in Variovorax sp. SCN45 around GFF3076

Experiment: Community=Kojac gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3075 and GFF3076 are separated by 148 nucleotidesGFF3076 and GFF3077 are separated by 61 nucleotides GFF3075 - Surface antigen, at 507,790 to 508,740 GFF3075 GFF3076 - SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19), at 508,889 to 509,638 GFF3076 GFF3077 - Gamma-glutamyltranspeptidase (EC 2.3.2.2) @ Glutathione hydrolase (EC 3.4.19.13), at 509,700 to 511,436 GFF3077 Position (kb) 508 509 510Strain fitness (log2 ratio) -2 -1 0 1 2at 507.917 kb on + strand, within GFF3075at 507.917 kb on + strand, within GFF3075at 507.917 kb on + strand, within GFF3075at 507.917 kb on + strand, within GFF3075at 507.917 kb on + strand, within GFF3075at 507.917 kb on + strand, within GFF3075at 507.917 kb on + strand, within GFF3075at 507.917 kb on + strand, within GFF3075at 507.917 kb on + strand, within GFF3075at 507.918 kb on - strand, within GFF3075at 507.918 kb on - strand, within GFF3075at 507.918 kb on - strand, within GFF3075at 507.918 kb on - strand, within GFF3075at 507.918 kb on - strand, within GFF3075at 507.918 kb on - strand, within GFF3075at 507.974 kb on + strand, within GFF3075at 507.974 kb on + strand, within GFF3075at 507.974 kb on + strand, within GFF3075at 507.974 kb on + strand, within GFF3075at 507.974 kb on + strand, within GFF3075at 507.974 kb on + strand, within GFF3075at 507.974 kb on + strand, within GFF3075at 507.974 kb on + strand, within GFF3075at 507.974 kb on + strand, within GFF3075at 507.974 kb on + strand, within GFF3075at 507.975 kb on - strand, within GFF3075at 507.975 kb on - strand, within GFF3075at 507.975 kb on - strand, within GFF3075at 507.975 kb on - strand, within GFF3075at 507.975 kb on - strand, within GFF3075at 507.975 kb on - strand, within GFF3075at 508.301 kb on + strand, within GFF3075at 508.302 kb on - strand, within GFF3075at 508.302 kb on - strand, within GFF3075at 508.302 kb on - strand, within GFF3075at 508.302 kb on - strand, within GFF3075at 508.397 kb on + strand, within GFF3075at 508.397 kb on + strand, within GFF3075at 508.398 kb on - strand, within GFF3075at 508.469 kb on + strand, within GFF3075at 508.469 kb on + strand, within GFF3075at 508.487 kb on + strand, within GFF3075at 508.487 kb on + strand, within GFF3075at 508.488 kb on - strand, within GFF3075at 508.488 kb on - strand, within GFF3075at 508.586 kb on + strand, within GFF3075at 508.586 kb on + strand, within GFF3075at 508.586 kb on + strand, within GFF3075at 508.586 kb on + strand, within GFF3075at 508.586 kb on + strand, within GFF3075at 508.586 kb on + strand, within GFF3075at 508.586 kb on + strand, within GFF3075at 508.586 kb on + strand, within GFF3075at 508.587 kb on - strand, within GFF3075at 508.587 kb on - strand, within GFF3075at 508.587 kb on - strand, within GFF3075at 508.587 kb on - strand, within GFF3075at 508.587 kb on - strand, within GFF3075at 508.587 kb on - strand, within GFF3075at 508.587 kb on - strand, within GFF3075at 508.587 kb on - strand, within GFF3075at 508.587 kb on - strand, within GFF3075at 508.587 kb on - strand, within GFF3075at 508.587 kb on - strand, within GFF3075at 508.587 kb on - strand, within GFF3075at 508.826 kb on - strandat 508.839 kb on + strandat 508.839 kb on + strandat 508.839 kb on + strandat 508.839 kb on + strandat 508.839 kb on + strandat 508.840 kb on - strandat 508.840 kb on - strandat 508.890 kb on + strandat 509.067 kb on + strand, within GFF3076at 509.067 kb on + strand, within GFF3076at 509.067 kb on + strand, within GFF3076at 509.067 kb on + strand, within GFF3076at 509.068 kb on - strand, within GFF3076at 509.068 kb on - strand, within GFF3076at 509.068 kb on - strand, within GFF3076at 509.221 kb on - strand, within GFF3076at 509.221 kb on - strand, within GFF3076at 509.221 kb on - strand, within GFF3076at 509.388 kb on + strand, within GFF3076at 509.388 kb on + strand, within GFF3076at 509.388 kb on + strand, within GFF3076at 509.388 kb on + strand, within GFF3076at 509.389 kb on - strand, within GFF3076at 509.389 kb on - strand, within GFF3076at 509.401 kb on - strand, within GFF3076at 509.401 kb on - strand, within GFF3076at 509.401 kb on - strand, within GFF3076at 509.454 kb on + strand, within GFF3076at 509.454 kb on + strand, within GFF3076at 509.455 kb on - strand, within GFF3076at 509.455 kb on - strand, within GFF3076at 509.455 kb on - strand, within GFF3076at 509.470 kb on - strand, within GFF3076at 509.496 kb on + strand, within GFF3076at 509.496 kb on + strand, within GFF3076at 509.497 kb on - strand, within GFF3076at 509.497 kb on - strand, within GFF3076at 509.497 kb on - strand, within GFF3076at 509.497 kb on - strand, within GFF3076at 509.497 kb on - strand, within GFF3076at 509.616 kb on + strandat 509.617 kb on - strandat 509.617 kb on - strandat 509.617 kb on - strandat 509.617 kb on - strandat 509.617 kb on - strandat 509.685 kb on + strandat 509.685 kb on + strandat 509.686 kb on - strandat 509.686 kb on - strandat 509.686 kb on - strandat 509.686 kb on - strandat 509.704 kb on + strandat 509.749 kb on + strandat 509.890 kb on + strand, within GFF3077at 509.890 kb on + strand, within GFF3077at 509.890 kb on + strand, within GFF3077at 509.891 kb on - strand, within GFF3077at 509.891 kb on - strand, within GFF3077at 509.971 kb on + strand, within GFF3077at 510.250 kb on + strand, within GFF3077at 510.250 kb on + strand, within GFF3077at 510.251 kb on - strand, within GFF3077at 510.251 kb on - strand, within GFF3077at 510.251 kb on - strand, within GFF3077at 510.292 kb on + strand, within GFF3077at 510.293 kb on - strand, within GFF3077at 510.293 kb on - strand, within GFF3077at 510.451 kb on + strand, within GFF3077at 510.451 kb on + strand, within GFF3077at 510.451 kb on + strand, within GFF3077at 510.451 kb on + strand, within GFF3077at 510.451 kb on + strand, within GFF3077at 510.451 kb on + strand, within GFF3077at 510.452 kb on - strand, within GFF3077at 510.452 kb on - strand, within GFF3077at 510.452 kb on - strand, within GFF3077at 510.469 kb on + strand, within GFF3077at 510.469 kb on + strand, within GFF3077at 510.469 kb on + strand, within GFF3077at 510.469 kb on + strand, within GFF3077at 510.469 kb on + strand, within GFF3077at 510.470 kb on - strand, within GFF3077at 510.470 kb on - strand, within GFF3077at 510.520 kb on + strand, within GFF3077at 510.521 kb on - strand, within GFF3077at 510.626 kb on - strand, within GFF3077at 510.626 kb on - strand, within GFF3077

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1
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507,917 + GFF3075 0.13 -0.4
507,917 + GFF3075 0.13 -1.1
507,917 + GFF3075 0.13 -0.7
507,917 + GFF3075 0.13 -1.6
507,917 + GFF3075 0.13 +1.5
507,917 + GFF3075 0.13 +1.1
507,917 + GFF3075 0.13 +1.5
507,917 + GFF3075 0.13 -0.8
507,917 + GFF3075 0.13 -1.6
507,918 - GFF3075 0.13 -0.5
507,918 - GFF3075 0.13 -0.6
507,918 - GFF3075 0.13 -0.5
507,918 - GFF3075 0.13 -0.4
507,918 - GFF3075 0.13 -0.0
507,918 - GFF3075 0.13 -0.4
507,974 + GFF3075 0.19 +2.4
507,974 + GFF3075 0.19 -0.3
507,974 + GFF3075 0.19 -0.6
507,974 + GFF3075 0.19 -1.8
507,974 + GFF3075 0.19 +0.0
507,974 + GFF3075 0.19 +1.5
507,974 + GFF3075 0.19 -1.5
507,974 + GFF3075 0.19 -2.0
507,974 + GFF3075 0.19 -0.8
507,974 + GFF3075 0.19 -0.5
507,975 - GFF3075 0.19 +0.7
507,975 - GFF3075 0.19 +0.5
507,975 - GFF3075 0.19 +0.5
507,975 - GFF3075 0.19 -1.0
507,975 - GFF3075 0.19 -1.2
507,975 - GFF3075 0.19 -1.0
508,301 + GFF3075 0.54 -0.5
508,302 - GFF3075 0.54 -1.2
508,302 - GFF3075 0.54 -0.9
508,302 - GFF3075 0.54 -0.7
508,302 - GFF3075 0.54 -0.2
508,397 + GFF3075 0.64 +1.0
508,397 + GFF3075 0.64 +0.5
508,398 - GFF3075 0.64 -1.5
508,469 + GFF3075 0.71 +0.5
508,469 + GFF3075 0.71 +0.2
508,487 + GFF3075 0.73 -0.1
508,487 + GFF3075 0.73 -0.5
508,488 - GFF3075 0.73 +0.5
508,488 - GFF3075 0.73 -0.7
508,586 + GFF3075 0.84 -0.0
508,586 + GFF3075 0.84 +0.7
508,586 + GFF3075 0.84 -0.5
508,586 + GFF3075 0.84 -0.2
508,586 + GFF3075 0.84 -2.1
508,586 + GFF3075 0.84 -0.5
508,586 + GFF3075 0.84 +0.7
508,586 + GFF3075 0.84 -0.2
508,587 - GFF3075 0.84 -2.2
508,587 - GFF3075 0.84 -0.3
508,587 - GFF3075 0.84 -0.4
508,587 - GFF3075 0.84 -0.0
508,587 - GFF3075 0.84 -0.0
508,587 - GFF3075 0.84 -0.5
508,587 - GFF3075 0.84 -0.6
508,587 - GFF3075 0.84 -0.1
508,587 - GFF3075 0.84 +0.2
508,587 - GFF3075 0.84 -1.1
508,587 - GFF3075 0.84 -0.9
508,587 - GFF3075 0.84 -1.4
508,826 - -0.6
508,839 + -0.2
508,839 + -0.0
508,839 + +0.4
508,839 + -1.3
508,839 + -0.3
508,840 - +0.2
508,840 - +0.3
508,890 + +0.5
509,067 + GFF3076 0.24 +0.5
509,067 + GFF3076 0.24 -0.5
509,067 + GFF3076 0.24 -0.3
509,067 + GFF3076 0.24 -1.2
509,068 - GFF3076 0.24 -1.5
509,068 - GFF3076 0.24 +0.8
509,068 - GFF3076 0.24 +1.0
509,221 - GFF3076 0.44 -1.3
509,221 - GFF3076 0.44 -1.1
509,221 - GFF3076 0.44 +0.2
509,388 + GFF3076 0.67 -0.2
509,388 + GFF3076 0.67 -1.5
509,388 + GFF3076 0.67 -0.2
509,388 + GFF3076 0.67 -0.8
509,389 - GFF3076 0.67 -0.3
509,389 - GFF3076 0.67 +0.2
509,401 - GFF3076 0.68 +0.4
509,401 - GFF3076 0.68 -2.2
509,401 - GFF3076 0.68 +0.2
509,454 + GFF3076 0.75 -0.2
509,454 + GFF3076 0.75 -0.7
509,455 - GFF3076 0.75 -1.2
509,455 - GFF3076 0.75 +0.3
509,455 - GFF3076 0.75 +0.2
509,470 - GFF3076 0.77 -0.2
509,496 + GFF3076 0.81 +0.7
509,496 + GFF3076 0.81 -1.3
509,497 - GFF3076 0.81 -1.5
509,497 - GFF3076 0.81 -1.0
509,497 - GFF3076 0.81 -0.9
509,497 - GFF3076 0.81 -1.6
509,497 - GFF3076 0.81 -0.1
509,616 + -0.4
509,617 - -0.7
509,617 - -0.4
509,617 - -0.2
509,617 - -0.7
509,617 - -0.7
509,685 + +1.0
509,685 + +0.0
509,686 - -0.5
509,686 - -0.5
509,686 - -0.5
509,686 - +0.5
509,704 + -0.4
509,749 + -0.9
509,890 + GFF3077 0.11 +1.2
509,890 + GFF3077 0.11 +0.5
509,890 + GFF3077 0.11 -0.1
509,891 - GFF3077 0.11 +0.1
509,891 - GFF3077 0.11 -0.0
509,971 + GFF3077 0.16 +1.3
510,250 + GFF3077 0.32 -1.3
510,250 + GFF3077 0.32 +0.2
510,251 - GFF3077 0.32 -0.7
510,251 - GFF3077 0.32 -0.5
510,251 - GFF3077 0.32 +0.1
510,292 + GFF3077 0.34 -0.1
510,293 - GFF3077 0.34 -0.0
510,293 - GFF3077 0.34 +1.5
510,451 + GFF3077 0.43 -0.8
510,451 + GFF3077 0.43 -1.0
510,451 + GFF3077 0.43 +0.1
510,451 + GFF3077 0.43 +0.2
510,451 + GFF3077 0.43 +0.3
510,451 + GFF3077 0.43 -0.4
510,452 - GFF3077 0.43 -0.8
510,452 - GFF3077 0.43 -2.4
510,452 - GFF3077 0.43 -0.4
510,469 + GFF3077 0.44 +0.1
510,469 + GFF3077 0.44 -0.3
510,469 + GFF3077 0.44 +0.2
510,469 + GFF3077 0.44 -0.3
510,469 + GFF3077 0.44 +0.3
510,470 - GFF3077 0.44 -0.1
510,470 - GFF3077 0.44 -0.1
510,520 + GFF3077 0.47 -0.2
510,521 - GFF3077 0.47 -0.6
510,626 - GFF3077 0.53 -0.0
510,626 - GFF3077 0.53 -0.6

Or see this region's nucleotide sequence