Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3050 and GFF3051 are separated by 28 nucleotides GFF3051 and GFF3052 are separated by 118 nucleotides GFF3052 and GFF3053 overlap by 4 nucleotides GFF3053 and GFF3054 overlap by 4 nucleotides
GFF3050 - Lactam utilization protein LamB, at 485,076 to 485,840
GFF3050
GFF3051 - no description, at 485,869 to 486,267
GFF3051
GFF3052 - Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54), at 486,386 to 487,369
GFF3052
GFF3053 - Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54), at 487,366 to 488,025
GFF3053
GFF3054 - Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14), at 488,022 to 489,374
GFF3054
Position (kb) 486
487
488 Strain fitness (log2 ratio) -2
-1
0
1 at 485.575 kb on + strand, within GFF3050 at 485.584 kb on + strand, within GFF3050 at 485.894 kb on - strand at 486.235 kb on + strand at 486.789 kb on + strand, within GFF3052 at 486.789 kb on + strand, within GFF3052 at 486.789 kb on + strand, within GFF3052 at 486.789 kb on + strand, within GFF3052 at 486.790 kb on - strand, within GFF3052 at 486.790 kb on - strand, within GFF3052 at 487.613 kb on + strand, within GFF3053 at 487.637 kb on + strand, within GFF3053 at 487.638 kb on - strand, within GFF3053 at 487.739 kb on + strand, within GFF3053 at 487.739 kb on + strand, within GFF3053 at 488.236 kb on + strand, within GFF3054 at 488.236 kb on + strand, within GFF3054 at 488.237 kb on - strand, within GFF3054
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 485,575 + GFF3050 0.65 -0.7 485,584 + GFF3050 0.66 -0.0 485,894 - +1.2 486,235 + -1.0 486,789 + GFF3052 0.41 -1.4 486,789 + GFF3052 0.41 -0.9 486,789 + GFF3052 0.41 +0.7 486,789 + GFF3052 0.41 -1.3 486,790 - GFF3052 0.41 +0.7 486,790 - GFF3052 0.41 -1.5 487,613 + GFF3053 0.37 -2.4 487,637 + GFF3053 0.41 +1.5 487,638 - GFF3053 0.41 -0.4 487,739 + GFF3053 0.57 -1.9 487,739 + GFF3053 0.57 -0.3 488,236 + GFF3054 0.16 -0.1 488,236 + GFF3054 0.16 -1.0 488,237 - GFF3054 0.16 -1.3
Or see this region's nucleotide sequence