Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3027 and GFF3028 are separated by 5 nucleotides GFF3028 and GFF3029 are separated by 58 nucleotides
GFF3027 - T6SS component TssK (ImpJ/VasE), at 455,193 to 456,515
GFF3027
GFF3028 - T6SS outer membrane component TssL (ImpK/VasF), at 456,521 to 457,282
GFF3028
GFF3029 - T6SS component TssM (IcmF/VasK), at 457,341 to 461,426
GFF3029
Position (kb) 456
457
458 Strain fitness (log2 ratio) -1
0
1 at 455.988 kb on + strand, within GFF3027 at 455.989 kb on - strand, within GFF3027 at 455.989 kb on - strand, within GFF3027 at 455.989 kb on - strand, within GFF3027 at 456.064 kb on - strand, within GFF3027 at 456.064 kb on - strand, within GFF3027 at 456.088 kb on + strand, within GFF3027 at 456.089 kb on - strand, within GFF3027 at 456.089 kb on - strand, within GFF3027 at 456.144 kb on + strand, within GFF3027 at 456.394 kb on - strand at 456.584 kb on + strand at 456.755 kb on + strand, within GFF3028 at 456.755 kb on + strand, within GFF3028 at 456.756 kb on - strand, within GFF3028 at 456.941 kb on + strand, within GFF3028 at 457.094 kb on + strand, within GFF3028 at 457.094 kb on + strand, within GFF3028 at 457.419 kb on + strand at 457.420 kb on - strand at 457.420 kb on - strand at 457.420 kb on - strand at 457.732 kb on - strand at 457.804 kb on - strand, within GFF3029 at 457.966 kb on - strand, within GFF3029 at 458.068 kb on - strand, within GFF3029 at 458.068 kb on - strand, within GFF3029 at 458.085 kb on + strand, within GFF3029 at 458.086 kb on - strand, within GFF3029 at 458.086 kb on - strand, within GFF3029 at 458.086 kb on - strand, within GFF3029 at 458.086 kb on - strand, within GFF3029 at 458.244 kb on + strand, within GFF3029 at 458.245 kb on - strand, within GFF3029 at 458.245 kb on - strand, within GFF3029 at 458.275 kb on - strand, within GFF3029
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 455,988 + GFF3027 0.60 +0.8 455,989 - GFF3027 0.60 -0.2 455,989 - GFF3027 0.60 -0.2 455,989 - GFF3027 0.60 -0.7 456,064 - GFF3027 0.66 -0.6 456,064 - GFF3027 0.66 -1.5 456,088 + GFF3027 0.68 +0.8 456,089 - GFF3027 0.68 +0.4 456,089 - GFF3027 0.68 -0.0 456,144 + GFF3027 0.72 -1.3 456,394 - -0.5 456,584 + -0.0 456,755 + GFF3028 0.31 -0.7 456,755 + GFF3028 0.31 -0.5 456,756 - GFF3028 0.31 -0.7 456,941 + GFF3028 0.55 -0.0 457,094 + GFF3028 0.75 -1.2 457,094 + GFF3028 0.75 -0.3 457,419 + -1.2 457,420 - +0.1 457,420 - -0.4 457,420 - +0.3 457,732 - +0.0 457,804 - GFF3029 0.11 -0.8 457,966 - GFF3029 0.15 -0.2 458,068 - GFF3029 0.18 -1.2 458,068 - GFF3029 0.18 -0.7 458,085 + GFF3029 0.18 -0.0 458,086 - GFF3029 0.18 -1.2 458,086 - GFF3029 0.18 -0.2 458,086 - GFF3029 0.18 -1.0 458,086 - GFF3029 0.18 -0.5 458,244 + GFF3029 0.22 +0.3 458,245 - GFF3029 0.22 +0.7 458,245 - GFF3029 0.22 -0.4 458,275 - GFF3029 0.23 +0.6
Or see this region's nucleotide sequence