Strain Fitness in Variovorax sp. SCN45 around GFF2913

Experiment: Community=Kojac gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2911 and GFF2912 are separated by 99 nucleotidesGFF2912 and GFF2913 overlap by 4 nucleotidesGFF2913 and GFF2914 overlap by 17 nucleotidesGFF2914 and GFF2915 are separated by 56 nucleotides GFF2911 - Predicted D-glucarate or D-galactorate regulator, GntR family, at 339,009 to 339,893 GFF2911 GFF2912 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 339,993 to 340,742 GFF2912 GFF2913 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 340,739 to 341,395 GFF2913 GFF2914 - Glutamine ABC transporter, ATP-binding protein GlnQ, at 341,379 to 342,107 GFF2914 GFF2915 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 342,164 to 342,958 GFF2915 Position (kb) 340 341 342Strain fitness (log2 ratio) -2 -1 0 1 2at 339.872 kb on + strandat 339.905 kb on + strandat 339.906 kb on - strandat 339.918 kb on - strandat 339.999 kb on + strandat 339.999 kb on + strandat 339.999 kb on + strandat 339.999 kb on + strandat 340.000 kb on - strandat 340.000 kb on - strandat 340.000 kb on - strandat 340.000 kb on - strandat 340.000 kb on - strandat 340.000 kb on - strandat 340.029 kb on + strandat 340.029 kb on + strandat 340.029 kb on + strandat 340.030 kb on - strandat 340.030 kb on - strandat 340.030 kb on - strandat 340.030 kb on - strandat 340.030 kb on - strandat 340.030 kb on - strandat 340.030 kb on - strandat 340.170 kb on + strand, within GFF2912at 340.170 kb on + strand, within GFF2912at 340.170 kb on + strand, within GFF2912at 340.171 kb on - strand, within GFF2912at 340.171 kb on - strand, within GFF2912at 340.171 kb on - strand, within GFF2912at 340.171 kb on - strand, within GFF2912at 340.171 kb on - strand, within GFF2912at 340.171 kb on - strand, within GFF2912at 340.171 kb on - strand, within GFF2912at 340.222 kb on - strand, within GFF2912at 340.222 kb on - strand, within GFF2912at 340.222 kb on - strand, within GFF2912at 340.302 kb on + strand, within GFF2912at 340.434 kb on + strand, within GFF2912at 340.434 kb on + strand, within GFF2912at 340.435 kb on - strand, within GFF2912at 340.563 kb on + strand, within GFF2912at 340.563 kb on + strand, within GFF2912at 340.563 kb on + strand, within GFF2912at 340.563 kb on + strand, within GFF2912at 340.563 kb on + strand, within GFF2912at 340.563 kb on + strand, within GFF2912at 340.564 kb on - strand, within GFF2912at 340.564 kb on - strand, within GFF2912at 340.584 kb on + strand, within GFF2912at 340.585 kb on - strand, within GFF2912at 340.635 kb on + strand, within GFF2912at 340.635 kb on + strand, within GFF2912at 340.635 kb on + strand, within GFF2912at 340.635 kb on + strand, within GFF2912at 340.635 kb on + strand, within GFF2912at 340.775 kb on + strandat 340.775 kb on + strandat 340.775 kb on + strandat 340.776 kb on - strandat 340.776 kb on - strandat 340.776 kb on - strandat 340.776 kb on - strandat 340.776 kb on - strandat 340.907 kb on + strand, within GFF2913at 340.908 kb on - strand, within GFF2913at 340.908 kb on - strand, within GFF2913at 340.908 kb on - strand, within GFF2913at 340.908 kb on - strand, within GFF2913at 340.958 kb on + strand, within GFF2913at 340.959 kb on - strand, within GFF2913at 341.027 kb on + strand, within GFF2913at 341.027 kb on + strand, within GFF2913at 341.028 kb on - strand, within GFF2913at 341.028 kb on - strand, within GFF2913at 341.028 kb on - strand, within GFF2913at 341.321 kb on + strand, within GFF2913at 341.322 kb on - strand, within GFF2913at 341.410 kb on - strandat 341.411 kb on + strandat 341.411 kb on + strandat 341.411 kb on + strandat 341.412 kb on - strandat 341.412 kb on - strandat 341.412 kb on - strandat 341.643 kb on + strand, within GFF2914at 341.644 kb on - strand, within GFF2914at 341.644 kb on - strand, within GFF2914at 341.644 kb on - strand, within GFF2914at 341.644 kb on - strand, within GFF2914at 341.644 kb on - strand, within GFF2914at 341.644 kb on - strand, within GFF2914at 342.009 kb on + strand, within GFF2914at 342.009 kb on + strand, within GFF2914at 342.009 kb on + strand, within GFF2914at 342.009 kb on + strand, within GFF2914at 342.009 kb on + strand, within GFF2914at 342.010 kb on - strand, within GFF2914at 342.105 kb on + strandat 342.106 kb on - strandat 342.141 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1
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339,872 + +1.0
339,905 + -1.5
339,906 - -0.5
339,918 - -0.1
339,999 + +0.6
339,999 + -1.1
339,999 + -0.2
339,999 + -0.1
340,000 - -0.3
340,000 - +0.6
340,000 - +0.3
340,000 - -1.6
340,000 - +1.1
340,000 - -0.7
340,029 + -1.7
340,029 + +0.9
340,029 + +0.3
340,030 - +0.7
340,030 - -0.2
340,030 - -0.1
340,030 - -2.7
340,030 - -0.2
340,030 - -0.7
340,030 - -0.6
340,170 + GFF2912 0.24 +0.4
340,170 + GFF2912 0.24 -0.4
340,170 + GFF2912 0.24 +1.2
340,171 - GFF2912 0.24 -0.7
340,171 - GFF2912 0.24 -0.5
340,171 - GFF2912 0.24 -0.3
340,171 - GFF2912 0.24 -0.3
340,171 - GFF2912 0.24 +0.7
340,171 - GFF2912 0.24 -0.6
340,171 - GFF2912 0.24 +0.1
340,222 - GFF2912 0.31 +1.2
340,222 - GFF2912 0.31 -0.9
340,222 - GFF2912 0.31 +0.9
340,302 + GFF2912 0.41 -1.1
340,434 + GFF2912 0.59 -0.1
340,434 + GFF2912 0.59 -0.6
340,435 - GFF2912 0.59 -0.3
340,563 + GFF2912 0.76 -1.8
340,563 + GFF2912 0.76 +0.9
340,563 + GFF2912 0.76 +0.0
340,563 + GFF2912 0.76 -1.8
340,563 + GFF2912 0.76 -0.8
340,563 + GFF2912 0.76 -0.1
340,564 - GFF2912 0.76 +0.4
340,564 - GFF2912 0.76 +0.3
340,584 + GFF2912 0.79 -0.4
340,585 - GFF2912 0.79 +0.5
340,635 + GFF2912 0.86 -0.0
340,635 + GFF2912 0.86 +0.0
340,635 + GFF2912 0.86 -0.3
340,635 + GFF2912 0.86 +0.9
340,635 + GFF2912 0.86 +1.1
340,775 + +0.1
340,775 + -0.4
340,775 + -1.8
340,776 - +0.5
340,776 - -0.4
340,776 - +0.2
340,776 - -0.8
340,776 - -1.6
340,907 + GFF2913 0.26 +1.5
340,908 - GFF2913 0.26 +0.1
340,908 - GFF2913 0.26 -0.4
340,908 - GFF2913 0.26 -0.4
340,908 - GFF2913 0.26 +0.1
340,958 + GFF2913 0.33 +1.1
340,959 - GFF2913 0.33 -0.3
341,027 + GFF2913 0.44 +0.1
341,027 + GFF2913 0.44 -1.1
341,028 - GFF2913 0.44 +0.9
341,028 - GFF2913 0.44 +0.6
341,028 - GFF2913 0.44 +0.1
341,321 + GFF2913 0.89 +1.8
341,322 - GFF2913 0.89 -0.8
341,410 - +1.5
341,411 + +1.5
341,411 + +1.1
341,411 + -1.2
341,412 - -1.9
341,412 - -0.2
341,412 - -2.0
341,643 + GFF2914 0.36 -1.3
341,644 - GFF2914 0.36 +0.9
341,644 - GFF2914 0.36 -0.3
341,644 - GFF2914 0.36 +0.3
341,644 - GFF2914 0.36 +1.2
341,644 - GFF2914 0.36 -0.1
341,644 - GFF2914 0.36 +0.7
342,009 + GFF2914 0.86 +1.5
342,009 + GFF2914 0.86 -0.6
342,009 + GFF2914 0.86 +0.3
342,009 + GFF2914 0.86 -0.2
342,009 + GFF2914 0.86 +0.3
342,010 - GFF2914 0.87 +0.4
342,105 + +0.3
342,106 - -0.8
342,141 - +0.2

Or see this region's nucleotide sequence