Strain Fitness in Variovorax sp. SCN45 around GFF283

Experiment: Community=Kojac gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF282 and GFF283 overlap by 4 nucleotidesGFF283 and GFF284 are separated by 31 nucleotidesGFF284 and GFF285 are separated by 45 nucleotides GFF282 - hypothetical protein, at 316,946 to 318,133 GFF282 GFF283 - no description, at 318,130 to 319,224 GFF283 GFF284 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 319,256 to 320,149 GFF284 GFF285 - no description, at 320,195 to 321,037 GFF285 Position (kb) 318 319 320Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 317.220 kb on + strand, within GFF282at 317.220 kb on + strand, within GFF282at 317.220 kb on + strand, within GFF282at 317.220 kb on + strand, within GFF282at 317.220 kb on + strand, within GFF282at 317.220 kb on + strand, within GFF282at 317.220 kb on + strand, within GFF282at 317.220 kb on + strand, within GFF282at 317.220 kb on + strand, within GFF282at 317.220 kb on + strand, within GFF282at 317.221 kb on - strand, within GFF282at 317.221 kb on - strand, within GFF282at 317.316 kb on + strand, within GFF282at 317.317 kb on - strand, within GFF282at 317.352 kb on + strand, within GFF282at 317.352 kb on + strand, within GFF282at 317.352 kb on + strand, within GFF282at 317.352 kb on + strand, within GFF282at 317.352 kb on + strand, within GFF282at 317.352 kb on + strand, within GFF282at 317.353 kb on - strand, within GFF282at 317.353 kb on - strand, within GFF282at 317.353 kb on - strand, within GFF282at 317.425 kb on + strand, within GFF282at 317.613 kb on + strand, within GFF282at 317.613 kb on + strand, within GFF282at 317.614 kb on - strand, within GFF282at 317.614 kb on - strand, within GFF282at 317.673 kb on + strand, within GFF282at 317.673 kb on + strand, within GFF282at 317.673 kb on + strand, within GFF282at 317.674 kb on - strand, within GFF282at 317.697 kb on + strand, within GFF282at 317.698 kb on - strand, within GFF282at 317.698 kb on - strand, within GFF282at 317.698 kb on - strand, within GFF282at 317.698 kb on - strand, within GFF282at 317.999 kb on - strand, within GFF282at 317.999 kb on - strand, within GFF282at 318.081 kb on + strandat 318.081 kb on + strandat 318.081 kb on + strandat 318.081 kb on + strandat 318.082 kb on - strandat 318.082 kb on - strandat 318.082 kb on - strandat 318.164 kb on + strandat 318.164 kb on + strandat 318.165 kb on - strandat 318.165 kb on - strandat 318.224 kb on + strandat 318.224 kb on + strandat 318.224 kb on + strandat 318.224 kb on + strandat 318.224 kb on + strandat 318.225 kb on - strandat 318.225 kb on - strandat 318.225 kb on - strandat 318.318 kb on - strand, within GFF283at 318.642 kb on - strand, within GFF283at 318.686 kb on + strand, within GFF283at 318.687 kb on - strand, within GFF283at 318.932 kb on + strand, within GFF283at 319.064 kb on + strand, within GFF283at 319.064 kb on + strand, within GFF283at 319.065 kb on - strand, within GFF283at 319.257 kb on + strandat 319.257 kb on + strandat 319.257 kb on + strandat 319.258 kb on - strandat 319.391 kb on - strand, within GFF284at 319.470 kb on + strand, within GFF284at 319.470 kb on + strand, within GFF284at 319.470 kb on + strand, within GFF284at 319.471 kb on - strand, within GFF284at 319.471 kb on - strand, within GFF284at 319.471 kb on - strand, within GFF284at 319.590 kb on + strand, within GFF284at 319.590 kb on + strand, within GFF284at 319.590 kb on + strand, within GFF284at 319.590 kb on + strand, within GFF284at 319.590 kb on + strand, within GFF284at 319.590 kb on + strand, within GFF284at 319.590 kb on + strand, within GFF284at 319.590 kb on + strand, within GFF284at 319.591 kb on - strand, within GFF284at 319.591 kb on - strand, within GFF284at 319.591 kb on - strand, within GFF284at 319.591 kb on - strand, within GFF284at 319.591 kb on - strand, within GFF284at 319.669 kb on + strand, within GFF284at 319.671 kb on + strand, within GFF284at 319.671 kb on + strand, within GFF284at 319.672 kb on - strand, within GFF284at 319.672 kb on - strand, within GFF284at 319.672 kb on - strand, within GFF284at 319.704 kb on - strand, within GFF284at 319.704 kb on - strand, within GFF284at 319.704 kb on - strand, within GFF284at 319.725 kb on + strand, within GFF284at 319.725 kb on + strand, within GFF284at 319.725 kb on + strand, within GFF284at 319.725 kb on + strand, within GFF284at 319.725 kb on + strand, within GFF284at 319.725 kb on + strand, within GFF284at 319.725 kb on + strand, within GFF284at 319.725 kb on + strand, within GFF284at 319.725 kb on + strand, within GFF284at 319.725 kb on + strand, within GFF284at 319.726 kb on - strand, within GFF284at 319.726 kb on - strand, within GFF284at 319.726 kb on - strand, within GFF284at 319.726 kb on - strand, within GFF284at 319.726 kb on - strand, within GFF284at 319.726 kb on - strand, within GFF284at 319.726 kb on - strand, within GFF284at 319.726 kb on - strand, within GFF284at 319.826 kb on - strand, within GFF284at 319.911 kb on + strand, within GFF284at 319.911 kb on + strand, within GFF284at 319.911 kb on + strand, within GFF284at 319.912 kb on - strand, within GFF284at 319.912 kb on - strand, within GFF284at 319.912 kb on - strand, within GFF284at 319.912 kb on - strand, within GFF284at 319.912 kb on - strand, within GFF284at 319.912 kb on - strand, within GFF284at 319.936 kb on - strand, within GFF284at 319.936 kb on - strand, within GFF284at 320.001 kb on + strand, within GFF284at 320.001 kb on + strand, within GFF284at 320.001 kb on + strand, within GFF284at 320.001 kb on + strand, within GFF284at 320.001 kb on + strand, within GFF284at 320.002 kb on - strand, within GFF284at 320.002 kb on - strand, within GFF284at 320.002 kb on - strand, within GFF284at 320.002 kb on - strand, within GFF284at 320.210 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1
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317,220 + GFF282 0.23 +0.8
317,220 + GFF282 0.23 -1.0
317,220 + GFF282 0.23 -0.0
317,220 + GFF282 0.23 -0.4
317,220 + GFF282 0.23 +0.1
317,220 + GFF282 0.23 -0.6
317,220 + GFF282 0.23 +0.2
317,220 + GFF282 0.23 -0.3
317,220 + GFF282 0.23 -0.9
317,220 + GFF282 0.23 +1.2
317,221 - GFF282 0.23 +1.2
317,221 - GFF282 0.23 -0.5
317,316 + GFF282 0.31 -0.6
317,317 - GFF282 0.31 -0.4
317,352 + GFF282 0.34 -0.4
317,352 + GFF282 0.34 +0.2
317,352 + GFF282 0.34 -0.5
317,352 + GFF282 0.34 -0.2
317,352 + GFF282 0.34 +0.0
317,352 + GFF282 0.34 -0.9
317,353 - GFF282 0.34 +0.5
317,353 - GFF282 0.34 -0.0
317,353 - GFF282 0.34 +2.4
317,425 + GFF282 0.40 -0.0
317,613 + GFF282 0.56 +0.0
317,613 + GFF282 0.56 -0.8
317,614 - GFF282 0.56 -0.3
317,614 - GFF282 0.56 +0.0
317,673 + GFF282 0.61 +0.1
317,673 + GFF282 0.61 +0.2
317,673 + GFF282 0.61 -0.1
317,674 - GFF282 0.61 -0.0
317,697 + GFF282 0.63 -1.2
317,698 - GFF282 0.63 -0.2
317,698 - GFF282 0.63 -1.1
317,698 - GFF282 0.63 -0.4
317,698 - GFF282 0.63 +0.0
317,999 - GFF282 0.89 -0.4
317,999 - GFF282 0.89 -2.5
318,081 + +0.1
318,081 + -0.4
318,081 + -0.7
318,081 + -0.8
318,082 - -0.2
318,082 - -1.8
318,082 - +0.2
318,164 + -0.4
318,164 + +1.0
318,165 - -0.8
318,165 - -0.4
318,224 + -0.4
318,224 + -0.1
318,224 + -0.1
318,224 + -1.2
318,224 + -0.3
318,225 - -0.6
318,225 - -0.6
318,225 - +0.2
318,318 - GFF283 0.17 -2.0
318,642 - GFF283 0.47 +0.0
318,686 + GFF283 0.51 -0.4
318,687 - GFF283 0.51 -0.6
318,932 + GFF283 0.73 +1.2
319,064 + GFF283 0.85 -1.3
319,064 + GFF283 0.85 +0.2
319,065 - GFF283 0.85 -0.4
319,257 + -0.9
319,257 + +0.0
319,257 + +0.5
319,258 - -0.6
319,391 - GFF284 0.15 -0.2
319,470 + GFF284 0.24 -0.8
319,470 + GFF284 0.24 -1.1
319,470 + GFF284 0.24 +0.5
319,471 - GFF284 0.24 +0.1
319,471 - GFF284 0.24 +0.4
319,471 - GFF284 0.24 -0.7
319,590 + GFF284 0.37 -0.3
319,590 + GFF284 0.37 -1.0
319,590 + GFF284 0.37 -0.4
319,590 + GFF284 0.37 -0.2
319,590 + GFF284 0.37 -0.3
319,590 + GFF284 0.37 +0.1
319,590 + GFF284 0.37 -0.1
319,590 + GFF284 0.37 -1.1
319,591 - GFF284 0.37 -2.0
319,591 - GFF284 0.37 -0.8
319,591 - GFF284 0.37 +0.4
319,591 - GFF284 0.37 -0.5
319,591 - GFF284 0.37 -0.1
319,669 + GFF284 0.46 +1.0
319,671 + GFF284 0.46 -0.6
319,671 + GFF284 0.46 -1.4
319,672 - GFF284 0.47 -1.6
319,672 - GFF284 0.47 -0.4
319,672 - GFF284 0.47 +0.6
319,704 - GFF284 0.50 +0.4
319,704 - GFF284 0.50 -1.4
319,704 - GFF284 0.50 -0.4
319,725 + GFF284 0.52 -0.1
319,725 + GFF284 0.52 -0.2
319,725 + GFF284 0.52 -1.4
319,725 + GFF284 0.52 +0.3
319,725 + GFF284 0.52 -0.2
319,725 + GFF284 0.52 +0.2
319,725 + GFF284 0.52 -0.3
319,725 + GFF284 0.52 -1.3
319,725 + GFF284 0.52 +0.2
319,725 + GFF284 0.52 -1.2
319,726 - GFF284 0.53 +0.8
319,726 - GFF284 0.53 +0.9
319,726 - GFF284 0.53 -2.8
319,726 - GFF284 0.53 -0.1
319,726 - GFF284 0.53 -0.1
319,726 - GFF284 0.53 -0.8
319,726 - GFF284 0.53 +0.7
319,726 - GFF284 0.53 -1.5
319,826 - GFF284 0.64 +0.0
319,911 + GFF284 0.73 -0.1
319,911 + GFF284 0.73 +0.5
319,911 + GFF284 0.73 -0.4
319,912 - GFF284 0.73 -0.8
319,912 - GFF284 0.73 +0.4
319,912 - GFF284 0.73 +0.9
319,912 - GFF284 0.73 -0.4
319,912 - GFF284 0.73 -0.6
319,912 - GFF284 0.73 -1.4
319,936 - GFF284 0.76 -0.3
319,936 - GFF284 0.76 -0.2
320,001 + GFF284 0.83 -0.3
320,001 + GFF284 0.83 -1.6
320,001 + GFF284 0.83 -0.4
320,001 + GFF284 0.83 -0.8
320,001 + GFF284 0.83 -1.0
320,002 - GFF284 0.83 +0.4
320,002 - GFF284 0.83 -0.5
320,002 - GFF284 0.83 +0.1
320,002 - GFF284 0.83 -1.2
320,210 - +0.7

Or see this region's nucleotide sequence