Strain Fitness in Variovorax sp. SCN45 around GFF2798

Experiment: Community=Kojac gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2796 and GFF2797 overlap by 14 nucleotidesGFF2797 and GFF2798 are separated by 8 nucleotidesGFF2798 and GFF2799 are separated by 43 nucleotidesGFF2799 and GFF2800 are separated by 21 nucleotides GFF2796 - Dihydrodipicolinate synthase family protein PP2639, at 225,810 to 226,706 GFF2796 GFF2797 - Molybdopterin synthase sulfur carrier subunit, at 226,693 to 226,944 GFF2797 GFF2798 - Molybdopterin molybdenumtransferase (EC 2.10.1.1), at 226,953 to 228,191 GFF2798 GFF2799 - Molybdopterin-guanine dinucleotide biosynthesis protein MobB, at 228,235 to 228,780 GFF2799 GFF2800 - Threonine synthase (EC 4.2.3.1), at 228,802 to 230,217 GFF2800 Position (kb) 226 227 228 229Strain fitness (log2 ratio) -2 -1 0 1 2at 226.155 kb on + strand, within GFF2796at 226.155 kb on + strand, within GFF2796at 226.155 kb on + strand, within GFF2796at 226.155 kb on + strand, within GFF2796at 226.155 kb on + strand, within GFF2796at 226.155 kb on + strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.233 kb on + strand, within GFF2796at 226.233 kb on + strand, within GFF2796at 226.233 kb on + strand, within GFF2796at 226.234 kb on - strand, within GFF2796at 226.234 kb on - strand, within GFF2796at 226.234 kb on - strand, within GFF2796at 226.245 kb on + strand, within GFF2796at 226.378 kb on + strand, within GFF2796at 226.378 kb on + strand, within GFF2796at 226.378 kb on + strand, within GFF2796at 226.379 kb on - strand, within GFF2796at 226.379 kb on - strand, within GFF2796at 226.817 kb on + strand, within GFF2797at 226.817 kb on + strand, within GFF2797at 226.818 kb on - strand, within GFF2797at 226.925 kb on + strandat 226.925 kb on + strandat 227.073 kb on + strandat 227.199 kb on - strand, within GFF2798at 227.199 kb on - strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.579 kb on - strand, within GFF2798at 227.579 kb on - strand, within GFF2798at 227.579 kb on - strand, within GFF2798at 227.579 kb on - strand, within GFF2798at 227.579 kb on - strand, within GFF2798at 227.579 kb on - strand, within GFF2798at 227.861 kb on + strand, within GFF2798at 227.861 kb on + strand, within GFF2798at 227.862 kb on - strand, within GFF2798at 227.862 kb on - strand, within GFF2798at 227.862 kb on - strand, within GFF2798at 227.918 kb on + strand, within GFF2798at 227.918 kb on + strand, within GFF2798at 227.919 kb on - strand, within GFF2798at 227.919 kb on - strand, within GFF2798at 227.919 kb on - strand, within GFF2798at 227.958 kb on - strand, within GFF2798at 228.028 kb on + strand, within GFF2798at 228.029 kb on - strand, within GFF2798at 228.029 kb on - strand, within GFF2798at 228.077 kb on + strandat 228.257 kb on + strandat 228.257 kb on + strandat 228.257 kb on + strandat 228.257 kb on + strandat 228.258 kb on - strandat 228.258 kb on - strandat 228.258 kb on - strandat 228.398 kb on + strand, within GFF2799at 228.398 kb on + strand, within GFF2799at 228.399 kb on - strand, within GFF2799at 228.399 kb on - strand, within GFF2799at 228.399 kb on - strand, within GFF2799at 228.399 kb on - strand, within GFF2799at 228.626 kb on + strand, within GFF2799at 228.626 kb on + strand, within GFF2799at 228.626 kb on + strand, within GFF2799at 228.626 kb on + strand, within GFF2799at 228.627 kb on - strand, within GFF2799at 228.627 kb on - strand, within GFF2799at 228.627 kb on - strand, within GFF2799

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1
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226,155 + GFF2796 0.38 -0.3
226,155 + GFF2796 0.38 +1.5
226,155 + GFF2796 0.38 -0.1
226,155 + GFF2796 0.38 +0.3
226,155 + GFF2796 0.38 -0.6
226,155 + GFF2796 0.38 +0.2
226,156 - GFF2796 0.39 -1.5
226,156 - GFF2796 0.39 -1.7
226,156 - GFF2796 0.39 -0.7
226,156 - GFF2796 0.39 +0.6
226,156 - GFF2796 0.39 -0.2
226,156 - GFF2796 0.39 -1.4
226,156 - GFF2796 0.39 -0.2
226,156 - GFF2796 0.39 +1.1
226,156 - GFF2796 0.39 +0.7
226,233 + GFF2796 0.47 +1.8
226,233 + GFF2796 0.47 -0.4
226,233 + GFF2796 0.47 -1.3
226,234 - GFF2796 0.47 +0.6
226,234 - GFF2796 0.47 -0.9
226,234 - GFF2796 0.47 -0.2
226,245 + GFF2796 0.48 -0.5
226,378 + GFF2796 0.63 -1.2
226,378 + GFF2796 0.63 -1.5
226,378 + GFF2796 0.63 -0.9
226,379 - GFF2796 0.63 +0.2
226,379 - GFF2796 0.63 -1.3
226,817 + GFF2797 0.49 -0.2
226,817 + GFF2797 0.49 -0.4
226,818 - GFF2797 0.50 -0.2
226,925 + -0.1
226,925 + -0.3
227,073 + -1.5
227,199 - GFF2798 0.20 +0.0
227,199 - GFF2798 0.20 -0.1
227,578 + GFF2798 0.50 +0.6
227,578 + GFF2798 0.50 +0.2
227,578 + GFF2798 0.50 +0.7
227,578 + GFF2798 0.50 -0.9
227,578 + GFF2798 0.50 +0.1
227,578 + GFF2798 0.50 +0.2
227,578 + GFF2798 0.50 -1.4
227,578 + GFF2798 0.50 +0.9
227,578 + GFF2798 0.50 -0.5
227,578 + GFF2798 0.50 +0.9
227,578 + GFF2798 0.50 -1.3
227,578 + GFF2798 0.50 -0.3
227,578 + GFF2798 0.50 +0.0
227,578 + GFF2798 0.50 -0.2
227,579 - GFF2798 0.51 +0.2
227,579 - GFF2798 0.51 -0.2
227,579 - GFF2798 0.51 +0.1
227,579 - GFF2798 0.51 -0.3
227,579 - GFF2798 0.51 +0.3
227,579 - GFF2798 0.51 -0.0
227,861 + GFF2798 0.73 +0.1
227,861 + GFF2798 0.73 +0.5
227,862 - GFF2798 0.73 +0.5
227,862 - GFF2798 0.73 -0.5
227,862 - GFF2798 0.73 +0.4
227,918 + GFF2798 0.78 +0.8
227,918 + GFF2798 0.78 -0.5
227,919 - GFF2798 0.78 -2.1
227,919 - GFF2798 0.78 -1.3
227,919 - GFF2798 0.78 +2.2
227,958 - GFF2798 0.81 +0.1
228,028 + GFF2798 0.87 -0.9
228,029 - GFF2798 0.87 +0.4
228,029 - GFF2798 0.87 -0.1
228,077 + -0.8
228,257 + +0.3
228,257 + -1.3
228,257 + -0.9
228,257 + +0.1
228,258 - -1.1
228,258 - +0.0
228,258 - -0.5
228,398 + GFF2799 0.30 -0.1
228,398 + GFF2799 0.30 -0.1
228,399 - GFF2799 0.30 +0.6
228,399 - GFF2799 0.30 +0.6
228,399 - GFF2799 0.30 -2.5
228,399 - GFF2799 0.30 -0.2
228,626 + GFF2799 0.72 +0.5
228,626 + GFF2799 0.72 -0.5
228,626 + GFF2799 0.72 +0.5
228,626 + GFF2799 0.72 +2.5
228,627 - GFF2799 0.72 +0.2
228,627 - GFF2799 0.72 -0.2
228,627 - GFF2799 0.72 +1.5

Or see this region's nucleotide sequence