Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2737 and GFF2738 are separated by 30 nucleotides GFF2738 and GFF2739 are separated by 25 nucleotides GFF2739 and GFF2740 are separated by 78 nucleotides
GFF2737 - Uncharacterized MFS-type transporter, at 173,414 to 174,583
GFF2737
GFF2738 - hypothetical protein, at 174,614 to 174,742
GFF2738
GFF2739 - Putative SAM-dependent methyltransferase Bucepa02006346, at 174,768 to 175,337
GFF2739
GFF2740 - 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7), at 175,416 to 176,306
GFF2740
Position (kb) 174
175
176 Strain fitness (log2 ratio) -2
-1
0
1
2 at 174.030 kb on - strand, within GFF2737 at 174.030 kb on - strand, within GFF2737 at 174.030 kb on - strand, within GFF2737 at 174.030 kb on - strand, within GFF2737 at 174.030 kb on - strand, within GFF2737 at 174.080 kb on + strand, within GFF2737 at 174.080 kb on + strand, within GFF2737 at 174.080 kb on + strand, within GFF2737 at 174.080 kb on + strand, within GFF2737 at 174.080 kb on + strand, within GFF2737 at 174.081 kb on - strand, within GFF2737 at 174.081 kb on - strand, within GFF2737 at 174.120 kb on - strand, within GFF2737 at 174.120 kb on - strand, within GFF2737 at 174.161 kb on + strand, within GFF2737 at 174.161 kb on + strand, within GFF2737 at 174.161 kb on + strand, within GFF2737 at 174.161 kb on + strand, within GFF2737 at 174.161 kb on + strand, within GFF2737 at 174.161 kb on + strand, within GFF2737 at 174.161 kb on + strand, within GFF2737 at 174.161 kb on + strand, within GFF2737 at 174.162 kb on - strand, within GFF2737 at 174.162 kb on - strand, within GFF2737 at 174.162 kb on - strand, within GFF2737 at 174.218 kb on + strand, within GFF2737 at 174.218 kb on + strand, within GFF2737 at 174.218 kb on + strand, within GFF2737 at 174.218 kb on + strand, within GFF2737 at 174.219 kb on - strand, within GFF2737 at 174.281 kb on + strand, within GFF2737 at 174.281 kb on + strand, within GFF2737 at 174.281 kb on + strand, within GFF2737 at 174.281 kb on + strand, within GFF2737 at 174.282 kb on - strand, within GFF2737 at 174.282 kb on - strand, within GFF2737 at 174.282 kb on - strand, within GFF2737 at 174.282 kb on - strand, within GFF2737 at 174.282 kb on - strand, within GFF2737 at 174.282 kb on - strand, within GFF2737 at 174.282 kb on - strand, within GFF2737 at 174.282 kb on - strand, within GFF2737 at 174.282 kb on - strand, within GFF2737 at 174.282 kb on - strand, within GFF2737 at 174.443 kb on + strand, within GFF2737 at 174.444 kb on - strand, within GFF2737 at 174.447 kb on + strand, within GFF2737 at 174.449 kb on + strand, within GFF2737 at 174.449 kb on + strand, within GFF2737 at 174.449 kb on + strand, within GFF2737 at 174.449 kb on + strand, within GFF2737 at 174.449 kb on + strand, within GFF2737 at 174.449 kb on + strand, within GFF2737 at 174.449 kb on + strand, within GFF2737 at 174.450 kb on - strand, within GFF2737 at 174.450 kb on - strand, within GFF2737 at 174.450 kb on - strand, within GFF2737 at 174.450 kb on - strand, within GFF2737 at 174.450 kb on - strand, within GFF2737 at 174.450 kb on - strand, within GFF2737 at 174.450 kb on - strand, within GFF2737 at 174.467 kb on + strand at 174.467 kb on + strand at 174.467 kb on + strand at 174.467 kb on + strand at 174.467 kb on + strand at 174.468 kb on - strand at 174.468 kb on - strand at 174.468 kb on - strand at 174.468 kb on - strand at 174.468 kb on - strand at 174.468 kb on - strand at 174.468 kb on - strand at 174.468 kb on - strand at 174.468 kb on - strand at 174.468 kb on - strand at 174.468 kb on - strand at 174.468 kb on - strand at 174.468 kb on - strand at 174.482 kb on + strand at 174.482 kb on + strand at 174.482 kb on + strand at 174.483 kb on - strand at 174.483 kb on - strand at 174.483 kb on - strand at 174.483 kb on - strand at 174.589 kb on + strand at 174.589 kb on + strand at 174.589 kb on + strand at 174.589 kb on + strand at 174.589 kb on + strand at 174.589 kb on + strand at 174.590 kb on - strand at 174.590 kb on - strand at 174.590 kb on - strand at 174.590 kb on - strand at 174.591 kb on + strand at 174.591 kb on + strand at 174.591 kb on + strand at 174.591 kb on + strand at 174.592 kb on - strand at 174.592 kb on - strand at 174.592 kb on - strand at 174.592 kb on - strand at 174.592 kb on - strand at 174.592 kb on - strand at 174.592 kb on - strand at 174.592 kb on - strand at 174.686 kb on + strand, within GFF2738 at 174.686 kb on + strand, within GFF2738 at 174.686 kb on + strand, within GFF2738 at 174.686 kb on + strand, within GFF2738 at 174.686 kb on + strand, within GFF2738 at 174.686 kb on + strand, within GFF2738 at 174.686 kb on + strand, within GFF2738 at 174.686 kb on + strand, within GFF2738 at 174.686 kb on + strand, within GFF2738 at 174.686 kb on + strand, within GFF2738 at 174.686 kb on + strand, within GFF2738 at 174.686 kb on + strand, within GFF2738 at 174.686 kb on + strand, within GFF2738 at 174.686 kb on + strand, within GFF2738 at 174.686 kb on + strand, within GFF2738 at 174.687 kb on - strand, within GFF2738 at 174.687 kb on - strand, within GFF2738 at 174.687 kb on - strand, within GFF2738 at 174.687 kb on - strand, within GFF2738 at 174.687 kb on - strand, within GFF2738 at 174.687 kb on - strand, within GFF2738 at 174.687 kb on - strand, within GFF2738 at 174.687 kb on - strand, within GFF2738 at 174.687 kb on - strand, within GFF2738 at 174.687 kb on - strand, within GFF2738 at 174.687 kb on - strand, within GFF2738 at 174.687 kb on - strand, within GFF2738 at 174.687 kb on - strand, within GFF2738 at 174.687 kb on - strand, within GFF2738 at 174.687 kb on - strand, within GFF2738 at 174.687 kb on - strand, within GFF2738 at 174.687 kb on - strand, within GFF2738 at 174.687 kb on - strand, within GFF2738 at 175.050 kb on + strand, within GFF2739 at 175.050 kb on + strand, within GFF2739 at 175.050 kb on + strand, within GFF2739 at 175.050 kb on + strand, within GFF2739 at 175.050 kb on + strand, within GFF2739 at 175.050 kb on + strand, within GFF2739 at 175.051 kb on - strand, within GFF2739 at 175.051 kb on - strand, within GFF2739 at 175.051 kb on - strand, within GFF2739 at 175.051 kb on - strand, within GFF2739 at 175.051 kb on - strand, within GFF2739 at 175.051 kb on - strand, within GFF2739 at 175.051 kb on - strand, within GFF2739 at 175.113 kb on + strand, within GFF2739 at 175.113 kb on + strand, within GFF2739 at 175.113 kb on + strand, within GFF2739 at 175.114 kb on - strand, within GFF2739 at 175.114 kb on - strand, within GFF2739 at 175.144 kb on + strand, within GFF2739 at 175.145 kb on - strand, within GFF2739 at 175.224 kb on + strand, within GFF2739 at 175.224 kb on + strand, within GFF2739 at 175.224 kb on + strand, within GFF2739 at 175.224 kb on + strand, within GFF2739 at 175.224 kb on + strand, within GFF2739 at 175.225 kb on - strand, within GFF2739 at 175.373 kb on + strand at 175.373 kb on + strand at 175.373 kb on + strand at 175.373 kb on + strand at 175.374 kb on - strand at 175.374 kb on - strand at 175.377 kb on + strand at 175.377 kb on + strand at 175.377 kb on + strand at 175.377 kb on + strand at 175.377 kb on + strand at 175.377 kb on + strand at 175.377 kb on + strand at 175.378 kb on - strand at 175.378 kb on - strand at 175.378 kb on - strand at 175.378 kb on - strand at 175.378 kb on - strand at 175.378 kb on - strand at 175.406 kb on + strand at 175.737 kb on + strand, within GFF2740 at 175.737 kb on + strand, within GFF2740 at 175.737 kb on + strand, within GFF2740 at 175.737 kb on + strand, within GFF2740 at 175.740 kb on + strand, within GFF2740 at 175.740 kb on + strand, within GFF2740 at 175.740 kb on + strand, within GFF2740 at 175.740 kb on + strand, within GFF2740 at 175.740 kb on + strand, within GFF2740 at 175.741 kb on - strand, within GFF2740 at 175.741 kb on - strand, within GFF2740 at 175.741 kb on - strand, within GFF2740 at 175.741 kb on - strand, within GFF2740 at 175.741 kb on - strand, within GFF2740 at 175.741 kb on - strand, within GFF2740 at 175.741 kb on - strand, within GFF2740 at 175.741 kb on - strand, within GFF2740 at 175.741 kb on - strand, within GFF2740 at 175.767 kb on + strand, within GFF2740 at 175.767 kb on + strand, within GFF2740 at 175.767 kb on + strand, within GFF2740 at 175.768 kb on - strand, within GFF2740 at 175.768 kb on - strand, within GFF2740 at 175.821 kb on + strand, within GFF2740 at 175.821 kb on + strand, within GFF2740 at 175.821 kb on + strand, within GFF2740 at 175.821 kb on + strand, within GFF2740 at 175.821 kb on + strand, within GFF2740 at 175.821 kb on + strand, within GFF2740 at 175.822 kb on - strand, within GFF2740 at 175.822 kb on - strand, within GFF2740 at 175.822 kb on - strand, within GFF2740 at 175.822 kb on - strand, within GFF2740 at 175.822 kb on - strand, within GFF2740 at 175.822 kb on - strand, within GFF2740 at 175.822 kb on - strand, within GFF2740 at 175.822 kb on - strand, within GFF2740 at 175.975 kb on - strand, within GFF2740 at 175.975 kb on - strand, within GFF2740 at 175.975 kb on - strand, within GFF2740 at 175.975 kb on - strand, within GFF2740
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 174,030 - GFF2737 0.53 -0.7 174,030 - GFF2737 0.53 +0.8 174,030 - GFF2737 0.53 -0.1 174,030 - GFF2737 0.53 +0.8 174,030 - GFF2737 0.53 -0.2 174,080 + GFF2737 0.57 +0.3 174,080 + GFF2737 0.57 +0.6 174,080 + GFF2737 0.57 -0.8 174,080 + GFF2737 0.57 -0.3 174,080 + GFF2737 0.57 -0.5 174,081 - GFF2737 0.57 -0.7 174,081 - GFF2737 0.57 -0.8 174,120 - GFF2737 0.60 +0.1 174,120 - GFF2737 0.60 -0.1 174,161 + GFF2737 0.64 -0.7 174,161 + GFF2737 0.64 -0.0 174,161 + GFF2737 0.64 +0.3 174,161 + GFF2737 0.64 +0.6 174,161 + GFF2737 0.64 +0.7 174,161 + GFF2737 0.64 +0.6 174,161 + GFF2737 0.64 -0.5 174,161 + GFF2737 0.64 -0.4 174,162 - GFF2737 0.64 +1.5 174,162 - GFF2737 0.64 -1.3 174,162 - GFF2737 0.64 +1.0 174,218 + GFF2737 0.69 -0.2 174,218 + GFF2737 0.69 -0.2 174,218 + GFF2737 0.69 -1.1 174,218 + GFF2737 0.69 +0.3 174,219 - GFF2737 0.69 -0.1 174,281 + GFF2737 0.74 -1.8 174,281 + GFF2737 0.74 -0.2 174,281 + GFF2737 0.74 -0.2 174,281 + GFF2737 0.74 -1.7 174,282 - GFF2737 0.74 -1.1 174,282 - GFF2737 0.74 +0.2 174,282 - GFF2737 0.74 -1.7 174,282 - GFF2737 0.74 -0.1 174,282 - GFF2737 0.74 +0.2 174,282 - GFF2737 0.74 +0.0 174,282 - GFF2737 0.74 -0.5 174,282 - GFF2737 0.74 -0.7 174,282 - GFF2737 0.74 +0.4 174,282 - GFF2737 0.74 -0.8 174,443 + GFF2737 0.88 -2.4 174,444 - GFF2737 0.88 +1.0 174,447 + GFF2737 0.88 -1.4 174,449 + GFF2737 0.88 -0.0 174,449 + GFF2737 0.88 -1.0 174,449 + GFF2737 0.88 +0.3 174,449 + GFF2737 0.88 -0.2 174,449 + GFF2737 0.88 -2.6 174,449 + GFF2737 0.88 +0.1 174,449 + GFF2737 0.88 -0.5 174,450 - GFF2737 0.89 -0.1 174,450 - GFF2737 0.89 -0.7 174,450 - GFF2737 0.89 +1.2 174,450 - GFF2737 0.89 -0.1 174,450 - GFF2737 0.89 +0.5 174,450 - GFF2737 0.89 -0.8 174,450 - GFF2737 0.89 -0.7 174,467 + -0.4 174,467 + +0.9 174,467 + -0.5 174,467 + -0.8 174,467 + +0.6 174,468 - -0.1 174,468 - +0.3 174,468 - -0.1 174,468 - -0.6 174,468 - +1.2 174,468 - -0.1 174,468 - -0.4 174,468 - +0.4 174,468 - -0.2 174,468 - +0.2 174,468 - -0.5 174,468 - -1.0 174,468 - +2.5 174,482 + +0.2 174,482 + +0.0 174,482 + -0.0 174,483 - -0.4 174,483 - +1.5 174,483 - -0.3 174,483 - -0.3 174,589 + +0.7 174,589 + -0.9 174,589 + +0.0 174,589 + -0.4 174,589 + -0.5 174,589 + -0.3 174,590 - -0.3 174,590 - +1.8 174,590 - +0.8 174,590 - +0.8 174,591 + -0.4 174,591 + -1.9 174,591 + -1.8 174,591 + -0.5 174,592 - +0.1 174,592 - +0.3 174,592 - +0.2 174,592 - +0.2 174,592 - -0.3 174,592 - -1.3 174,592 - -0.8 174,592 - -1.5 174,686 + GFF2738 0.56 -0.7 174,686 + GFF2738 0.56 -1.3 174,686 + GFF2738 0.56 -1.4 174,686 + GFF2738 0.56 -0.7 174,686 + GFF2738 0.56 -0.4 174,686 + GFF2738 0.56 -0.8 174,686 + GFF2738 0.56 +0.9 174,686 + GFF2738 0.56 -0.1 174,686 + GFF2738 0.56 -0.6 174,686 + GFF2738 0.56 -1.0 174,686 + GFF2738 0.56 +0.0 174,686 + GFF2738 0.56 -0.3 174,686 + GFF2738 0.56 -1.2 174,686 + GFF2738 0.56 +0.3 174,686 + GFF2738 0.56 +0.0 174,687 - GFF2738 0.57 +1.0 174,687 - GFF2738 0.57 -0.1 174,687 - GFF2738 0.57 +0.3 174,687 - GFF2738 0.57 +0.5 174,687 - GFF2738 0.57 -0.5 174,687 - GFF2738 0.57 -0.4 174,687 - GFF2738 0.57 -1.2 174,687 - GFF2738 0.57 -0.4 174,687 - GFF2738 0.57 +0.3 174,687 - GFF2738 0.57 +0.3 174,687 - GFF2738 0.57 +0.2 174,687 - GFF2738 0.57 +0.1 174,687 - GFF2738 0.57 +0.1 174,687 - GFF2738 0.57 -0.1 174,687 - GFF2738 0.57 -0.1 174,687 - GFF2738 0.57 +0.3 174,687 - GFF2738 0.57 -0.8 174,687 - GFF2738 0.57 -0.5 175,050 + GFF2739 0.49 -0.1 175,050 + GFF2739 0.49 +0.9 175,050 + GFF2739 0.49 -0.2 175,050 + GFF2739 0.49 +2.1 175,050 + GFF2739 0.49 -0.8 175,050 + GFF2739 0.49 +0.3 175,051 - GFF2739 0.50 +0.9 175,051 - GFF2739 0.50 +0.8 175,051 - GFF2739 0.50 -0.3 175,051 - GFF2739 0.50 -1.1 175,051 - GFF2739 0.50 +0.2 175,051 - GFF2739 0.50 +0.5 175,051 - GFF2739 0.50 +0.0 175,113 + GFF2739 0.61 -0.9 175,113 + GFF2739 0.61 -0.4 175,113 + GFF2739 0.61 +0.4 175,114 - GFF2739 0.61 +0.1 175,114 - GFF2739 0.61 -0.9 175,144 + GFF2739 0.66 -0.2 175,145 - GFF2739 0.66 +2.1 175,224 + GFF2739 0.80 -0.3 175,224 + GFF2739 0.80 -0.0 175,224 + GFF2739 0.80 -0.5 175,224 + GFF2739 0.80 +0.7 175,224 + GFF2739 0.80 +0.3 175,225 - GFF2739 0.80 -0.4 175,373 + +0.2 175,373 + -0.7 175,373 + +0.5 175,373 + +0.4 175,374 - -1.2 175,374 - -0.0 175,377 + -0.6 175,377 + -0.2 175,377 + -0.4 175,377 + -0.6 175,377 + -0.3 175,377 + -0.5 175,377 + +0.3 175,378 - +0.5 175,378 - +0.1 175,378 - +1.5 175,378 - -1.0 175,378 - -0.0 175,378 - +0.0 175,406 + +0.7 175,737 + GFF2740 0.36 -0.1 175,737 + GFF2740 0.36 -0.5 175,737 + GFF2740 0.36 +0.9 175,737 + GFF2740 0.36 -0.8 175,740 + GFF2740 0.36 +0.6 175,740 + GFF2740 0.36 +0.6 175,740 + GFF2740 0.36 -0.7 175,740 + GFF2740 0.36 +1.8 175,740 + GFF2740 0.36 +0.3 175,741 - GFF2740 0.36 -0.1 175,741 - GFF2740 0.36 +1.9 175,741 - GFF2740 0.36 +1.9 175,741 - GFF2740 0.36 -1.8 175,741 - GFF2740 0.36 -0.3 175,741 - GFF2740 0.36 +1.3 175,741 - GFF2740 0.36 -0.3 175,741 - GFF2740 0.36 -0.0 175,741 - GFF2740 0.36 +0.9 175,767 + GFF2740 0.39 -0.5 175,767 + GFF2740 0.39 -0.5 175,767 + GFF2740 0.39 -0.1 175,768 - GFF2740 0.40 +1.5 175,768 - GFF2740 0.40 +0.0 175,821 + GFF2740 0.45 -0.4 175,821 + GFF2740 0.45 -1.0 175,821 + GFF2740 0.45 +0.9 175,821 + GFF2740 0.45 -1.5 175,821 + GFF2740 0.45 +1.5 175,821 + GFF2740 0.45 -1.1 175,822 - GFF2740 0.46 +1.5 175,822 - GFF2740 0.46 +2.1 175,822 - GFF2740 0.46 -0.8 175,822 - GFF2740 0.46 -0.2 175,822 - GFF2740 0.46 -0.6 175,822 - GFF2740 0.46 +0.5 175,822 - GFF2740 0.46 +0.2 175,822 - GFF2740 0.46 +0.4 175,975 - GFF2740 0.63 +0.5 175,975 - GFF2740 0.63 -0.2 175,975 - GFF2740 0.63 -1.3 175,975 - GFF2740 0.63 -0.2
Or see this region's nucleotide sequence