Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2729 and GFF2730 overlap by 1 nucleotides GFF2730 and GFF2731 are separated by 66 nucleotides
GFF2729 - hypothetical protein, at 163,780 to 163,971
GFF2729
GFF2730 - DNA topoisomerase IV subunit A (EC 5.99.1.3), at 163,971 to 166,376
GFF2730
GFF2731 - hypothetical protein, at 166,443 to 167,564
GFF2731
Position (kb) 163
164
165
166
167 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 163.132 kb on + strand at 163.133 kb on - strand at 163.204 kb on + strand at 163.205 kb on - strand at 163.254 kb on + strand at 163.254 kb on + strand at 163.255 kb on - strand at 163.286 kb on + strand at 163.286 kb on + strand at 163.374 kb on + strand at 163.374 kb on + strand at 163.374 kb on + strand at 163.374 kb on + strand at 163.374 kb on + strand at 163.375 kb on - strand at 163.375 kb on - strand at 163.375 kb on - strand at 163.560 kb on + strand at 163.560 kb on + strand at 163.561 kb on - strand at 163.579 kb on + strand at 163.580 kb on - strand at 163.580 kb on - strand at 163.580 kb on - strand at 163.593 kb on + strand at 163.593 kb on + strand at 163.593 kb on + strand at 163.625 kb on + strand at 163.626 kb on - strand at 163.652 kb on + strand at 163.721 kb on + strand at 163.721 kb on + strand at 163.721 kb on + strand at 163.721 kb on + strand at 163.722 kb on - strand at 163.722 kb on - strand at 163.754 kb on + strand at 163.754 kb on + strand at 163.755 kb on - strand at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 164.350 kb on - strand, within GFF2730 at 164.411 kb on - strand, within GFF2730 at 164.411 kb on - strand, within GFF2730 at 164.660 kb on - strand, within GFF2730 at 164.660 kb on - strand, within GFF2730 at 164.660 kb on - strand, within GFF2730 at 165.886 kb on + strand, within GFF2730 at 165.886 kb on + strand, within GFF2730 at 165.887 kb on - strand, within GFF2730 at 165.967 kb on + strand, within GFF2730 at 165.968 kb on - strand, within GFF2730 at 165.968 kb on - strand, within GFF2730 at 166.205 kb on - strand at 166.291 kb on + strand at 166.292 kb on - strand at 166.516 kb on + strand at 166.516 kb on + strand at 166.516 kb on + strand at 166.516 kb on + strand at 166.516 kb on + strand at 166.517 kb on - strand at 166.517 kb on - strand at 166.517 kb on - strand at 166.517 kb on - strand at 166.517 kb on - strand at 166.517 kb on - strand at 166.517 kb on - strand at 166.517 kb on - strand at 166.606 kb on + strand, within GFF2731 at 166.606 kb on + strand, within GFF2731 at 166.606 kb on + strand, within GFF2731 at 166.607 kb on - strand, within GFF2731 at 166.607 kb on - strand, within GFF2731 at 166.607 kb on - strand, within GFF2731 at 166.607 kb on - strand, within GFF2731 at 166.612 kb on + strand, within GFF2731 at 166.699 kb on + strand, within GFF2731 at 166.699 kb on + strand, within GFF2731 at 166.700 kb on - strand, within GFF2731 at 166.746 kb on + strand, within GFF2731 at 166.746 kb on + strand, within GFF2731 at 166.746 kb on + strand, within GFF2731 at 166.747 kb on - strand, within GFF2731 at 166.747 kb on - strand, within GFF2731 at 166.747 kb on - strand, within GFF2731 at 166.774 kb on + strand, within GFF2731 at 166.774 kb on + strand, within GFF2731 at 166.774 kb on + strand, within GFF2731 at 166.774 kb on + strand, within GFF2731 at 166.774 kb on + strand, within GFF2731 at 166.775 kb on - strand, within GFF2731 at 166.775 kb on - strand, within GFF2731 at 166.798 kb on + strand, within GFF2731 at 166.798 kb on + strand, within GFF2731 at 166.798 kb on + strand, within GFF2731 at 166.798 kb on + strand, within GFF2731 at 166.798 kb on + strand, within GFF2731 at 166.799 kb on - strand, within GFF2731 at 166.799 kb on - strand, within GFF2731 at 166.799 kb on - strand, within GFF2731 at 166.799 kb on - strand, within GFF2731 at 166.844 kb on + strand, within GFF2731 at 166.921 kb on + strand, within GFF2731 at 166.921 kb on + strand, within GFF2731 at 166.921 kb on + strand, within GFF2731 at 166.922 kb on - strand, within GFF2731 at 166.922 kb on - strand, within GFF2731 at 166.922 kb on - strand, within GFF2731 at 166.922 kb on - strand, within GFF2731 at 166.922 kb on - strand, within GFF2731 at 166.922 kb on - strand, within GFF2731 at 167.074 kb on + strand, within GFF2731 at 167.074 kb on + strand, within GFF2731 at 167.075 kb on - strand, within GFF2731 at 167.075 kb on - strand, within GFF2731 at 167.075 kb on - strand, within GFF2731 at 167.075 kb on - strand, within GFF2731 at 167.075 kb on - strand, within GFF2731 at 167.075 kb on - strand, within GFF2731 at 167.075 kb on - strand, within GFF2731 at 167.075 kb on - strand, within GFF2731 at 167.080 kb on + strand, within GFF2731 at 167.080 kb on + strand, within GFF2731 at 167.080 kb on + strand, within GFF2731 at 167.080 kb on + strand, within GFF2731 at 167.080 kb on + strand, within GFF2731 at 167.080 kb on + strand, within GFF2731 at 167.080 kb on + strand, within GFF2731 at 167.080 kb on + strand, within GFF2731 at 167.080 kb on + strand, within GFF2731 at 167.081 kb on - strand, within GFF2731 at 167.081 kb on - strand, within GFF2731 at 167.081 kb on - strand, within GFF2731 at 167.081 kb on - strand, within GFF2731 at 167.081 kb on - strand, within GFF2731 at 167.081 kb on - strand, within GFF2731 at 167.131 kb on + strand, within GFF2731 at 167.131 kb on + strand, within GFF2731 at 167.131 kb on + strand, within GFF2731 at 167.131 kb on + strand, within GFF2731 at 167.131 kb on + strand, within GFF2731 at 167.132 kb on - strand, within GFF2731 at 167.132 kb on - strand, within GFF2731 at 167.132 kb on - strand, within GFF2731 at 167.221 kb on + strand, within GFF2731 at 167.221 kb on + strand, within GFF2731 at 167.221 kb on + strand, within GFF2731 at 167.221 kb on + strand, within GFF2731 at 167.221 kb on + strand, within GFF2731 at 167.221 kb on + strand, within GFF2731 at 167.222 kb on - strand, within GFF2731 at 167.222 kb on - strand, within GFF2731 at 167.222 kb on - strand, within GFF2731 at 167.222 kb on - strand, within GFF2731 at 167.222 kb on - strand, within GFF2731 at 167.222 kb on - strand, within GFF2731 at 167.222 kb on - strand, within GFF2731 at 167.222 kb on - strand, within GFF2731 at 167.222 kb on - strand, within GFF2731 at 167.222 kb on - strand, within GFF2731 at 167.222 kb on - strand, within GFF2731 at 167.222 kb on - strand, within GFF2731 at 167.222 kb on - strand, within GFF2731 at 167.222 kb on - strand, within GFF2731 at 167.234 kb on - strand, within GFF2731 at 167.234 kb on - strand, within GFF2731 at 167.234 kb on - strand, within GFF2731 at 167.234 kb on - strand, within GFF2731 at 167.234 kb on - strand, within GFF2731 at 167.234 kb on - strand, within GFF2731
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 163,132 + -0.3 163,133 - +0.2 163,204 + -0.9 163,205 - +0.3 163,254 + +1.3 163,254 + -0.9 163,255 - -0.5 163,286 + -0.8 163,286 + -0.5 163,374 + -0.4 163,374 + +0.1 163,374 + -0.3 163,374 + -0.0 163,374 + +0.7 163,375 - -1.0 163,375 - -0.4 163,375 - -0.1 163,560 + -0.1 163,560 + -0.0 163,561 - -0.5 163,579 + +0.5 163,580 - +2.5 163,580 - +0.9 163,580 - -0.8 163,593 + +0.9 163,593 + -0.6 163,593 + -0.8 163,625 + -0.2 163,626 - -1.0 163,652 + -1.5 163,721 + +1.8 163,721 + -0.5 163,721 + +0.0 163,721 + -0.6 163,722 - +0.1 163,722 - -0.9 163,754 + -0.7 163,754 + -0.1 163,755 - -1.2 163,907 + GFF2729 0.66 +0.1 163,907 + GFF2729 0.66 -0.8 163,907 + GFF2729 0.66 -1.1 163,907 + GFF2729 0.66 +0.1 163,907 + GFF2729 0.66 -0.4 163,907 + GFF2729 0.66 -1.1 163,907 + GFF2729 0.66 -1.7 163,907 + GFF2729 0.66 -0.4 163,907 + GFF2729 0.66 -0.9 163,907 + GFF2729 0.66 -0.2 163,907 + GFF2729 0.66 -0.2 163,907 + GFF2729 0.66 +0.2 163,907 + GFF2729 0.66 -0.1 163,907 + GFF2729 0.66 +0.9 163,907 + GFF2729 0.66 -0.1 163,907 + GFF2729 0.66 -0.1 163,908 - GFF2729 0.67 -0.1 163,908 - GFF2729 0.67 +0.5 163,908 - GFF2729 0.67 +0.4 163,908 - GFF2729 0.67 +0.8 163,908 - GFF2729 0.67 -0.9 163,908 - GFF2729 0.67 -1.4 163,908 - GFF2729 0.67 +0.1 163,908 - GFF2729 0.67 -0.0 163,908 - GFF2729 0.67 -0.1 163,908 - GFF2729 0.67 -0.5 163,908 - GFF2729 0.67 -0.7 163,908 - GFF2729 0.67 +0.0 163,908 - GFF2729 0.67 +0.1 163,908 - GFF2729 0.67 -1.5 163,908 - GFF2729 0.67 +0.9 163,908 - GFF2729 0.67 -0.7 163,908 - GFF2729 0.67 +0.4 163,908 - GFF2729 0.67 -0.3 163,908 - GFF2729 0.67 +0.2 163,908 - GFF2729 0.67 -1.2 164,350 - GFF2730 0.16 -1.1 164,411 - GFF2730 0.18 +2.5 164,411 - GFF2730 0.18 +0.5 164,660 - GFF2730 0.29 -0.5 164,660 - GFF2730 0.29 -0.8 164,660 - GFF2730 0.29 +0.5 165,886 + GFF2730 0.80 +1.5 165,886 + GFF2730 0.80 +0.5 165,887 - GFF2730 0.80 +1.5 165,967 + GFF2730 0.83 -0.1 165,968 - GFF2730 0.83 -0.1 165,968 - GFF2730 0.83 +2.5 166,205 - +0.5 166,291 + +1.5 166,292 - +0.5 166,516 + -3.3 166,516 + -0.8 166,516 + -0.6 166,516 + -1.1 166,516 + -1.0 166,517 - +0.2 166,517 - -1.5 166,517 - -0.1 166,517 - +0.1 166,517 - +0.2 166,517 - -1.5 166,517 - -0.1 166,517 - -0.8 166,606 + GFF2731 0.15 +0.5 166,606 + GFF2731 0.15 +0.9 166,606 + GFF2731 0.15 +0.0 166,607 - GFF2731 0.15 +0.3 166,607 - GFF2731 0.15 +0.9 166,607 - GFF2731 0.15 -0.4 166,607 - GFF2731 0.15 -0.2 166,612 + GFF2731 0.15 -0.3 166,699 + GFF2731 0.23 -0.1 166,699 + GFF2731 0.23 -0.9 166,700 - GFF2731 0.23 +0.0 166,746 + GFF2731 0.27 -0.2 166,746 + GFF2731 0.27 +0.1 166,746 + GFF2731 0.27 -0.3 166,747 - GFF2731 0.27 -1.5 166,747 - GFF2731 0.27 +0.5 166,747 - GFF2731 0.27 -0.1 166,774 + GFF2731 0.30 -0.5 166,774 + GFF2731 0.30 -0.7 166,774 + GFF2731 0.30 +1.1 166,774 + GFF2731 0.30 -0.7 166,774 + GFF2731 0.30 -1.3 166,775 - GFF2731 0.30 -0.4 166,775 - GFF2731 0.30 -2.1 166,798 + GFF2731 0.32 -0.4 166,798 + GFF2731 0.32 -0.0 166,798 + GFF2731 0.32 -0.1 166,798 + GFF2731 0.32 -0.6 166,798 + GFF2731 0.32 -0.7 166,799 - GFF2731 0.32 -0.7 166,799 - GFF2731 0.32 +0.0 166,799 - GFF2731 0.32 -0.5 166,799 - GFF2731 0.32 +0.3 166,844 + GFF2731 0.36 -0.9 166,921 + GFF2731 0.43 -1.0 166,921 + GFF2731 0.43 -0.5 166,921 + GFF2731 0.43 +0.9 166,922 - GFF2731 0.43 +0.7 166,922 - GFF2731 0.43 +1.3 166,922 - GFF2731 0.43 -1.1 166,922 - GFF2731 0.43 -0.1 166,922 - GFF2731 0.43 +0.2 166,922 - GFF2731 0.43 -0.0 167,074 + GFF2731 0.56 -0.1 167,074 + GFF2731 0.56 +1.2 167,075 - GFF2731 0.56 -0.5 167,075 - GFF2731 0.56 -0.7 167,075 - GFF2731 0.56 -0.7 167,075 - GFF2731 0.56 -0.4 167,075 - GFF2731 0.56 -0.7 167,075 - GFF2731 0.56 +0.1 167,075 - GFF2731 0.56 -0.6 167,075 - GFF2731 0.56 -0.2 167,080 + GFF2731 0.57 -1.3 167,080 + GFF2731 0.57 +0.2 167,080 + GFF2731 0.57 -0.5 167,080 + GFF2731 0.57 +0.2 167,080 + GFF2731 0.57 -1.3 167,080 + GFF2731 0.57 -0.5 167,080 + GFF2731 0.57 -0.1 167,080 + GFF2731 0.57 +0.1 167,080 + GFF2731 0.57 +0.1 167,081 - GFF2731 0.57 -0.9 167,081 - GFF2731 0.57 +1.2 167,081 - GFF2731 0.57 +1.3 167,081 - GFF2731 0.57 -0.2 167,081 - GFF2731 0.57 -0.8 167,081 - GFF2731 0.57 -0.8 167,131 + GFF2731 0.61 -0.1 167,131 + GFF2731 0.61 -0.7 167,131 + GFF2731 0.61 +0.9 167,131 + GFF2731 0.61 -1.3 167,131 + GFF2731 0.61 -0.8 167,132 - GFF2731 0.61 -0.0 167,132 - GFF2731 0.61 -0.4 167,132 - GFF2731 0.61 -2.2 167,221 + GFF2731 0.69 -0.5 167,221 + GFF2731 0.69 -0.6 167,221 + GFF2731 0.69 +0.5 167,221 + GFF2731 0.69 -0.3 167,221 + GFF2731 0.69 -0.5 167,221 + GFF2731 0.69 +0.5 167,222 - GFF2731 0.69 +0.6 167,222 - GFF2731 0.69 -1.3 167,222 - GFF2731 0.69 +0.6 167,222 - GFF2731 0.69 -0.9 167,222 - GFF2731 0.69 -0.5 167,222 - GFF2731 0.69 -0.4 167,222 - GFF2731 0.69 -0.6 167,222 - GFF2731 0.69 +0.3 167,222 - GFF2731 0.69 +0.2 167,222 - GFF2731 0.69 -0.7 167,222 - GFF2731 0.69 +0.5 167,222 - GFF2731 0.69 -1.1 167,222 - GFF2731 0.69 -0.3 167,222 - GFF2731 0.69 +0.2 167,234 - GFF2731 0.70 -0.1 167,234 - GFF2731 0.70 +0.5 167,234 - GFF2731 0.70 +0.8 167,234 - GFF2731 0.70 -1.1 167,234 - GFF2731 0.70 -0.3 167,234 - GFF2731 0.70 +0.4
Or see this region's nucleotide sequence