Strain Fitness in Variovorax sp. SCN45 around GFF2713

Experiment: Community=Kojac gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2711 and GFF2712 are separated by 138 nucleotidesGFF2712 and GFF2713 are separated by 31 nucleotides GFF2711 - hypothetical protein, at 142,873 to 143,403 GFF2711 GFF2712 - no description, at 143,542 to 144,189 GFF2712 GFF2713 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 144,221 to 145,741 GFF2713 Position (kb) 144 145 146Strain fitness (log2 ratio) -3 -2 -1 0 1at 143.414 kb on - strandat 143.492 kb on + strandat 143.509 kb on + strandat 143.509 kb on + strandat 143.634 kb on + strand, within GFF2712at 143.634 kb on + strand, within GFF2712at 143.634 kb on + strand, within GFF2712at 143.634 kb on + strand, within GFF2712at 143.716 kb on + strand, within GFF2712at 144.017 kb on + strand, within GFF2712at 144.018 kb on - strand, within GFF2712at 144.020 kb on + strand, within GFF2712at 144.020 kb on + strand, within GFF2712at 144.303 kb on + strandat 144.303 kb on + strandat 144.303 kb on + strandat 144.429 kb on + strand, within GFF2713at 144.756 kb on + strand, within GFF2713at 144.756 kb on + strand, within GFF2713at 144.757 kb on - strand, within GFF2713at 144.757 kb on - strand, within GFF2713at 144.757 kb on - strand, within GFF2713at 144.906 kb on + strand, within GFF2713at 144.906 kb on + strand, within GFF2713at 144.906 kb on + strand, within GFF2713at 144.906 kb on + strand, within GFF2713at 144.907 kb on - strand, within GFF2713at 144.907 kb on - strand, within GFF2713at 144.907 kb on - strand, within GFF2713at 145.083 kb on + strand, within GFF2713at 145.125 kb on + strand, within GFF2713at 145.176 kb on + strand, within GFF2713at 145.176 kb on + strand, within GFF2713at 145.176 kb on + strand, within GFF2713at 145.176 kb on + strand, within GFF2713at 145.176 kb on + strand, within GFF2713at 145.176 kb on + strand, within GFF2713at 145.177 kb on - strand, within GFF2713at 145.177 kb on - strand, within GFF2713at 145.177 kb on - strand, within GFF2713at 145.177 kb on - strand, within GFF2713at 145.177 kb on - strand, within GFF2713at 145.177 kb on - strand, within GFF2713at 145.177 kb on - strand, within GFF2713at 145.177 kb on - strand, within GFF2713at 145.194 kb on + strand, within GFF2713at 145.194 kb on + strand, within GFF2713at 145.195 kb on - strand, within GFF2713at 145.219 kb on - strand, within GFF2713at 145.498 kb on - strand, within GFF2713at 145.498 kb on - strand, within GFF2713at 145.802 kb on + strandat 145.802 kb on + strandat 145.803 kb on - strandat 145.803 kb on - strandat 145.803 kb on - strandat 145.803 kb on - strandat 145.803 kb on - strandat 145.959 kb on + strandat 146.028 kb on + strandat 146.029 kb on - strandat 146.029 kb on - strandat 146.029 kb on - strandat 146.199 kb on + strandat 146.199 kb on + strandat 146.200 kb on - strandat 146.205 kb on + strandat 146.206 kb on - strandat 146.301 kb on + strandat 146.301 kb on + strandat 146.302 kb on - strandat 146.302 kb on - strandat 146.326 kb on - strandat 146.365 kb on - strandat 146.631 kb on + strandat 146.631 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1
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143,414 - -0.0
143,492 + +0.9
143,509 + -0.2
143,509 + +0.0
143,634 + GFF2712 0.14 +0.1
143,634 + GFF2712 0.14 -1.0
143,634 + GFF2712 0.14 -0.4
143,634 + GFF2712 0.14 +1.0
143,716 + GFF2712 0.27 -0.2
144,017 + GFF2712 0.73 -0.3
144,018 - GFF2712 0.73 +0.2
144,020 + GFF2712 0.74 +0.6
144,020 + GFF2712 0.74 +0.5
144,303 + +0.8
144,303 + +0.5
144,303 + -0.3
144,429 + GFF2713 0.14 -1.1
144,756 + GFF2713 0.35 -0.2
144,756 + GFF2713 0.35 -0.1
144,757 - GFF2713 0.35 -1.1
144,757 - GFF2713 0.35 +0.3
144,757 - GFF2713 0.35 -0.5
144,906 + GFF2713 0.45 -0.3
144,906 + GFF2713 0.45 -0.5
144,906 + GFF2713 0.45 +1.1
144,906 + GFF2713 0.45 -0.2
144,907 - GFF2713 0.45 -1.5
144,907 - GFF2713 0.45 +0.3
144,907 - GFF2713 0.45 +0.0
145,083 + GFF2713 0.57 -0.9
145,125 + GFF2713 0.59 -1.0
145,176 + GFF2713 0.63 +0.1
145,176 + GFF2713 0.63 -0.5
145,176 + GFF2713 0.63 -2.9
145,176 + GFF2713 0.63 -1.2
145,176 + GFF2713 0.63 +0.5
145,176 + GFF2713 0.63 +0.6
145,177 - GFF2713 0.63 -1.5
145,177 - GFF2713 0.63 +0.1
145,177 - GFF2713 0.63 -1.7
145,177 - GFF2713 0.63 -0.7
145,177 - GFF2713 0.63 -0.4
145,177 - GFF2713 0.63 -1.0
145,177 - GFF2713 0.63 +0.7
145,177 - GFF2713 0.63 -0.2
145,194 + GFF2713 0.64 +0.8
145,194 + GFF2713 0.64 +0.1
145,195 - GFF2713 0.64 -2.1
145,219 - GFF2713 0.66 +0.7
145,498 - GFF2713 0.84 +0.4
145,498 - GFF2713 0.84 -0.6
145,802 + -0.6
145,802 + -0.5
145,803 - -0.6
145,803 - -0.7
145,803 - -0.2
145,803 - +0.5
145,803 - -1.8
145,959 + +0.1
146,028 + +0.5
146,029 - -0.3
146,029 - +0.7
146,029 - -0.2
146,199 + +0.9
146,199 + -0.0
146,200 - +0.5
146,205 + -0.3
146,206 - -0.0
146,301 + -0.4
146,301 + +0.2
146,302 - +0.2
146,302 - -0.5
146,326 - +1.0
146,365 - +0.5
146,631 + -0.4
146,631 + -1.3

Or see this region's nucleotide sequence