Strain Fitness in Variovorax sp. SCN45 around GFF2687

Experiment: Community=Kojac gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=1
114,137	+		GFF2686	0.76	-0.8
114,138	-		GFF2686	0.76	-0.9
114,272	+		GFF2686	0.80	-0.2
114,273	-		GFF2686	0.80	-1.5
114,273	-		GFF2686	0.80	-0.0
114,539	+		GFF2686	0.88	+0.4
114,540	-		GFF2686	0.88	+0.1
114,540	-		GFF2686	0.88	+0.3
114,677	+				-0.9
114,788	+				-0.7
114,789	-				-2.4
114,842	+				+0.8
114,843	-				+2.2
114,987	+				+0.2
114,988	-				-0.2
115,233	+				-0.5
115,437	+		GFF2687	0.14	+0.8
115,437	+		GFF2687	0.14	+0.5
115,437	+		GFF2687	0.14	-0.6
115,437	+		GFF2687	0.14	+0.2
115,437	+		GFF2687	0.14	-0.4
115,437	+		GFF2687	0.14	+0.2
115,438	-		GFF2687	0.15	-0.0
115,438	-		GFF2687	0.15	-0.6
115,438	-		GFF2687	0.15	+0.1
115,446	+		GFF2687	0.15	-0.7
115,447	-		GFF2687	0.15	+1.2
115,585	-		GFF2687	0.20	-0.2
115,785	+		GFF2687	0.27	+0.8
115,786	-		GFF2687	0.27	-0.2
115,869	+		GFF2687	0.30	+0.5
115,870	-		GFF2687	0.30	+1.2
115,870	-		GFF2687	0.30	-1.0
115,870	-		GFF2687	0.30	-0.2
115,870	-		GFF2687	0.30	+0.5
115,950	+		GFF2687	0.33	+0.5
115,950	+		GFF2687	0.33	-0.3
115,962	+		GFF2687	0.34	+0.7
115,962	+		GFF2687	0.34	-0.4
115,963	-		GFF2687	0.34	-0.4
115,977	+		GFF2687	0.34	-0.3
115,977	+		GFF2687	0.34	-0.4
115,977	+		GFF2687	0.34	+1.1
115,978	-		GFF2687	0.34	-0.2
115,989	+		GFF2687	0.35	-1.5
116,047	-		GFF2687	0.37	+1.0
116,503	-		GFF2687	0.53	+0.6
116,832	+		GFF2687	0.65	+1.0
117,073	+		GFF2687	0.74	+1.0
117,073	+		GFF2687	0.74	-0.4
117,074	-		GFF2687	0.74	-0.7
117,591	+				-0.3
117,591	+				+0.4
117,591	+				-0.3
117,592	-				-0.4
117,657	+				-0.7
117,657	+				-0.5
117,657	+				-0.1
117,657	+				+0.2
117,657	+				+0.1
117,658	-				-2.0
117,702	+				-0.3
117,703	-				-0.1
117,732	+				-0.4
117,733	-				-0.6
118,289	+		GFF2688	0.47	+0.3
118,290	-		GFF2688	0.47	-0.5
118,530	-		GFF2688	0.76	+1.1
118,679	+				-0.2
118,679	+				+1.5
118,691	+				-1.4
118,692	-				-0.6