Strain Fitness in Variovorax sp. SCN45 around GFF2594

Experiment: Community=Kojac gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=1
60	+				+0.4
76	+				-0.7
250	-		GFF2594	0.24	+0.2
343	-		GFF2594	0.33	-1.2
603	+		GFF2594	0.58	+0.1
603	+		GFF2594	0.58	-0.6
603	+		GFF2594	0.58	+0.2
603	+		GFF2594	0.58	+0.9
604	-		GFF2594	0.58	+2.5
613	+		GFF2594	0.59	-0.8
613	+		GFF2594	0.59	-0.5
613	+		GFF2594	0.59	+0.3
613	+		GFF2594	0.59	-0.1
613	+		GFF2594	0.59	-1.5
613	+		GFF2594	0.59	-1.1
613	+		GFF2594	0.59	+0.9
613	+		GFF2594	0.59	+0.2
613	+		GFF2594	0.59	+0.1
613	+		GFF2594	0.59	+1.5
614	-		GFF2594	0.59	+0.1
614	-		GFF2594	0.59	-0.5
614	-		GFF2594	0.59	+1.5
614	-		GFF2594	0.59	-0.8
614	-		GFF2594	0.59	-2.3
614	-		GFF2594	0.59	-0.1
614	-		GFF2594	0.59	+0.3
614	-		GFF2594	0.59	-1.7
614	-		GFF2594	0.59	+1.6
614	-		GFF2594	0.59	-0.2
614	-		GFF2594	0.59	+0.3
614	-		GFF2594	0.59	+0.5
858	+		GFF2594	0.83	+0.8
858	+		GFF2594	0.83	+0.1
859	-		GFF2594	0.83	+0.5
1,048	+				-0.2
1,048	+				-0.1
1,048	+				+1.1
1,075	+				-0.5
1,075	+				-0.7
1,088	-				+0.1
1,088	-				-0.7
1,139	-				-0.2
1,139	-				-0.7
1,144	+				-0.7
1,145	-				-0.9
1,411	+		GFF2595	0.32	+1.5
1,411	+		GFF2595	0.32	-0.0
1,411	+		GFF2595	0.32	-1.8
1,411	+		GFF2595	0.32	-2.7
1,411	+		GFF2595	0.32	-0.5
1,411	+		GFF2595	0.32	-0.3
1,411	+		GFF2595	0.32	+0.2
1,412	-		GFF2595	0.32	-0.1
1,412	-		GFF2595	0.32	-0.1
1,412	-		GFF2595	0.32	-2.3
1,412	-		GFF2595	0.32	+0.2
1,588	+		GFF2595	0.55	-0.1
1,588	+		GFF2595	0.55	-1.1
1,805	-		GFF2595	0.83	-0.7