Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2558 and GFF2559 overlap by 4 nucleotides GFF2559 and GFF2560 overlap by 14 nucleotides GFF2560 and GFF2561 are separated by 35 nucleotides GFF2561 and GFF2562 are separated by 54 nucleotides GFF2562 and GFF2563 are separated by 192 nucleotides
GFF2558 - DNA protection during starvation protein, at 618,952 to 619,512
GFF2558
GFF2559 - hypothetical protein, at 619,509 to 620,021
GFF2559
GFF2560 - FIG00932643: hypothetical protein, at 620,008 to 620,391
GFF2560
GFF2561 - FIG00931134: hypothetical protein, at 620,427 to 620,801
GFF2561
GFF2562 - UPF0391 membrane protein RGE_28580, at 620,856 to 621,020
GFF2562
GFF2563 - Two-component system sensor histidine kinase, at 621,213 to 622,532
GFF2563
Position (kb) 620
621 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 619.070 kb on + strand, within GFF2558 at 619.071 kb on - strand, within GFF2558 at 619.142 kb on + strand, within GFF2558 at 619.142 kb on + strand, within GFF2558 at 619.142 kb on + strand, within GFF2558 at 619.307 kb on + strand, within GFF2558 at 619.307 kb on + strand, within GFF2558 at 619.307 kb on + strand, within GFF2558 at 619.307 kb on + strand, within GFF2558 at 619.307 kb on + strand, within GFF2558 at 619.307 kb on + strand, within GFF2558 at 619.307 kb on + strand, within GFF2558 at 619.307 kb on + strand, within GFF2558 at 619.308 kb on - strand, within GFF2558 at 619.308 kb on - strand, within GFF2558 at 619.319 kb on + strand, within GFF2558 at 619.319 kb on + strand, within GFF2558 at 619.319 kb on + strand, within GFF2558 at 619.395 kb on - strand, within GFF2558 at 619.395 kb on - strand, within GFF2558 at 619.395 kb on - strand, within GFF2558 at 619.395 kb on - strand, within GFF2558 at 619.590 kb on + strand, within GFF2559 at 619.590 kb on + strand, within GFF2559 at 619.591 kb on - strand, within GFF2559 at 619.591 kb on - strand, within GFF2559 at 619.702 kb on + strand, within GFF2559 at 619.702 kb on + strand, within GFF2559 at 619.702 kb on + strand, within GFF2559 at 619.702 kb on + strand, within GFF2559 at 619.703 kb on - strand, within GFF2559 at 619.703 kb on - strand, within GFF2559 at 619.867 kb on + strand, within GFF2559 at 619.868 kb on - strand, within GFF2559 at 620.324 kb on + strand, within GFF2560 at 620.324 kb on + strand, within GFF2560 at 620.324 kb on + strand, within GFF2560 at 620.324 kb on + strand, within GFF2560 at 620.324 kb on + strand, within GFF2560 at 620.324 kb on + strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.431 kb on + strand at 620.431 kb on + strand at 620.431 kb on + strand at 620.431 kb on + strand at 620.431 kb on + strand at 620.431 kb on + strand at 620.432 kb on - strand at 620.432 kb on - strand at 620.432 kb on - strand at 620.432 kb on - strand at 620.432 kb on - strand at 620.432 kb on - strand at 620.533 kb on + strand, within GFF2561 at 620.533 kb on + strand, within GFF2561 at 620.533 kb on + strand, within GFF2561 at 620.533 kb on + strand, within GFF2561 at 620.533 kb on + strand, within GFF2561 at 620.533 kb on + strand, within GFF2561 at 620.533 kb on + strand, within GFF2561 at 620.534 kb on - strand, within GFF2561 at 620.534 kb on - strand, within GFF2561 at 620.534 kb on - strand, within GFF2561 at 620.534 kb on - strand, within GFF2561 at 620.534 kb on - strand, within GFF2561 at 620.534 kb on - strand, within GFF2561 at 620.719 kb on + strand, within GFF2561 at 620.719 kb on + strand, within GFF2561 at 620.720 kb on - strand, within GFF2561 at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.848 kb on + strand at 620.848 kb on + strand at 620.848 kb on + strand at 620.849 kb on - strand at 620.849 kb on - strand at 620.849 kb on - strand at 620.849 kb on - strand at 620.849 kb on - strand at 620.849 kb on - strand at 620.849 kb on - strand at 620.852 kb on + strand at 620.852 kb on + strand at 620.852 kb on + strand at 620.852 kb on + strand at 620.852 kb on + strand at 620.852 kb on + strand at 620.852 kb on + strand at 620.852 kb on + strand at 620.852 kb on + strand at 620.852 kb on + strand at 620.852 kb on + strand at 620.852 kb on + strand at 620.852 kb on + strand at 620.853 kb on - strand at 620.853 kb on - strand at 620.853 kb on - strand at 620.853 kb on - strand at 620.853 kb on - strand at 620.853 kb on - strand at 620.853 kb on - strand at 620.853 kb on - strand at 620.853 kb on - strand at 620.853 kb on - strand at 620.853 kb on - strand at 620.853 kb on - strand at 620.857 kb on + strand at 620.857 kb on + strand at 620.857 kb on + strand at 620.857 kb on + strand at 620.857 kb on + strand at 620.857 kb on + strand at 620.857 kb on + strand at 620.858 kb on - strand at 620.858 kb on - strand at 620.858 kb on - strand at 620.858 kb on - strand at 620.858 kb on - strand at 620.858 kb on - strand at 620.858 kb on - strand at 620.858 kb on - strand at 620.858 kb on - strand at 620.858 kb on - strand at 620.858 kb on - strand at 620.858 kb on - strand at 620.894 kb on + strand, within GFF2562 at 621.010 kb on + strand at 621.010 kb on + strand at 621.010 kb on + strand at 621.010 kb on + strand at 621.010 kb on + strand at 621.010 kb on + strand at 621.010 kb on + strand at 621.010 kb on + strand at 621.010 kb on + strand at 621.010 kb on + strand at 621.011 kb on - strand at 621.011 kb on - strand at 621.011 kb on - strand at 621.011 kb on - strand at 621.011 kb on - strand at 621.011 kb on - strand at 621.110 kb on + strand at 621.110 kb on + strand at 621.110 kb on + strand at 621.110 kb on + strand at 621.110 kb on + strand at 621.110 kb on + strand at 621.110 kb on + strand at 621.110 kb on + strand at 621.110 kb on + strand at 621.110 kb on + strand at 621.110 kb on + strand at 621.110 kb on + strand at 621.110 kb on + strand at 621.110 kb on + strand at 621.110 kb on + strand at 621.110 kb on + strand at 621.110 kb on + strand at 621.110 kb on + strand at 621.110 kb on + strand at 621.110 kb on + strand at 621.111 kb on - strand at 621.111 kb on - strand at 621.111 kb on - strand at 621.111 kb on - strand at 621.111 kb on - strand at 621.111 kb on - strand at 621.111 kb on - strand at 621.111 kb on - strand at 621.111 kb on - strand at 621.111 kb on - strand at 621.111 kb on - strand at 621.111 kb on - strand at 621.111 kb on - strand at 621.111 kb on - strand at 621.111 kb on - strand at 621.111 kb on - strand at 621.111 kb on - strand at 621.111 kb on - strand at 621.111 kb on - strand at 621.158 kb on + strand at 621.158 kb on + strand at 621.158 kb on + strand at 621.158 kb on + strand at 621.158 kb on + strand at 621.158 kb on + strand at 621.158 kb on + strand at 621.159 kb on - strand at 621.159 kb on - strand at 621.159 kb on - strand at 621.159 kb on - strand at 621.159 kb on - strand at 621.165 kb on + strand at 621.165 kb on + strand at 621.165 kb on + strand at 621.166 kb on - strand at 621.166 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 619,070 + GFF2558 0.21 +1.0 619,071 - GFF2558 0.21 -0.6 619,142 + GFF2558 0.34 +2.7 619,142 + GFF2558 0.34 +1.3 619,142 + GFF2558 0.34 +0.8 619,307 + GFF2558 0.63 +0.8 619,307 + GFF2558 0.63 -0.1 619,307 + GFF2558 0.63 -1.1 619,307 + GFF2558 0.63 -1.4 619,307 + GFF2558 0.63 +0.3 619,307 + GFF2558 0.63 -0.2 619,307 + GFF2558 0.63 -0.2 619,307 + GFF2558 0.63 -0.1 619,308 - GFF2558 0.63 +0.7 619,308 - GFF2558 0.63 -0.1 619,319 + GFF2558 0.65 -0.3 619,319 + GFF2558 0.65 -0.8 619,319 + GFF2558 0.65 -3.1 619,395 - GFF2558 0.79 +0.0 619,395 - GFF2558 0.79 +0.7 619,395 - GFF2558 0.79 -0.7 619,395 - GFF2558 0.79 -0.0 619,590 + GFF2559 0.16 +1.3 619,590 + GFF2559 0.16 -0.5 619,591 - GFF2559 0.16 +0.1 619,591 - GFF2559 0.16 -0.8 619,702 + GFF2559 0.38 -1.6 619,702 + GFF2559 0.38 -0.2 619,702 + GFF2559 0.38 -0.1 619,702 + GFF2559 0.38 +0.8 619,703 - GFF2559 0.38 +0.5 619,703 - GFF2559 0.38 -0.8 619,867 + GFF2559 0.70 -0.5 619,868 - GFF2559 0.70 +0.6 620,324 + GFF2560 0.82 -0.2 620,324 + GFF2560 0.82 +0.9 620,324 + GFF2560 0.82 +0.9 620,324 + GFF2560 0.82 +1.1 620,324 + GFF2560 0.82 +1.0 620,324 + GFF2560 0.82 -0.2 620,325 - GFF2560 0.83 +0.0 620,325 - GFF2560 0.83 +1.7 620,325 - GFF2560 0.83 +0.3 620,325 - GFF2560 0.83 -0.7 620,325 - GFF2560 0.83 +2.0 620,325 - GFF2560 0.83 -1.9 620,325 - GFF2560 0.83 -0.7 620,325 - GFF2560 0.83 +0.8 620,325 - GFF2560 0.83 -0.8 620,325 - GFF2560 0.83 +0.7 620,431 + -0.5 620,431 + -0.1 620,431 + +0.5 620,431 + +0.0 620,431 + +0.3 620,431 + +0.3 620,432 - -0.4 620,432 - -0.9 620,432 - -0.4 620,432 - -0.3 620,432 - -0.3 620,432 - +0.6 620,533 + GFF2561 0.28 -0.5 620,533 + GFF2561 0.28 +0.7 620,533 + GFF2561 0.28 -0.4 620,533 + GFF2561 0.28 -0.3 620,533 + GFF2561 0.28 -0.2 620,533 + GFF2561 0.28 -1.0 620,533 + GFF2561 0.28 +0.3 620,534 - GFF2561 0.29 -0.3 620,534 - GFF2561 0.29 -0.1 620,534 - GFF2561 0.29 -0.3 620,534 - GFF2561 0.29 -0.7 620,534 - GFF2561 0.29 -0.3 620,534 - GFF2561 0.29 +1.7 620,719 + GFF2561 0.78 +0.9 620,719 + GFF2561 0.78 -1.9 620,720 - GFF2561 0.78 -1.3 620,805 + -0.9 620,805 + -0.7 620,805 + -0.1 620,805 + -0.6 620,805 + -0.1 620,805 + -0.1 620,805 + +0.4 620,805 + -1.8 620,805 + +0.0 620,805 + -0.7 620,805 + +0.7 620,805 + -1.1 620,805 + -0.9 620,805 + -1.0 620,805 + -0.7 620,805 + +0.7 620,806 - +0.3 620,806 - -1.5 620,806 - +0.3 620,806 - +0.1 620,806 - -0.2 620,806 - -0.6 620,806 - -1.1 620,806 - -0.2 620,806 - +0.1 620,806 - -0.1 620,806 - -1.3 620,806 - -0.5 620,806 - +0.9 620,806 - -0.4 620,806 - -0.5 620,806 - -0.5 620,806 - -0.0 620,806 - +1.7 620,848 + -1.4 620,848 + -0.1 620,848 + +0.1 620,849 - -0.2 620,849 - +0.1 620,849 - +0.7 620,849 - +0.0 620,849 - -0.8 620,849 - +0.7 620,849 - -0.1 620,852 + -0.2 620,852 + +0.1 620,852 + -0.1 620,852 + +0.4 620,852 + -0.5 620,852 + +0.1 620,852 + +2.1 620,852 + -1.5 620,852 + -1.2 620,852 + +0.7 620,852 + -1.3 620,852 + +0.3 620,852 + -0.7 620,853 - +0.1 620,853 - +0.8 620,853 - -0.2 620,853 - +0.3 620,853 - +0.2 620,853 - +0.9 620,853 - +0.8 620,853 - +0.1 620,853 - -0.5 620,853 - +0.8 620,853 - +0.4 620,853 - +0.1 620,857 + -0.5 620,857 + +0.2 620,857 + -1.1 620,857 + -0.0 620,857 + -1.0 620,857 + -1.0 620,857 + +0.3 620,858 - +0.5 620,858 - -0.8 620,858 - -0.1 620,858 - +0.1 620,858 - -0.4 620,858 - -0.4 620,858 - -0.0 620,858 - +0.6 620,858 - +0.3 620,858 - -0.5 620,858 - +0.1 620,858 - +0.2 620,894 + GFF2562 0.23 -0.1 621,010 + -0.1 621,010 + -0.1 621,010 + -0.3 621,010 + -1.3 621,010 + +0.4 621,010 + -0.3 621,010 + -0.1 621,010 + -0.9 621,010 + -1.4 621,010 + -0.8 621,011 - +0.6 621,011 - +0.5 621,011 - -0.6 621,011 - +0.1 621,011 - -1.0 621,011 - -1.4 621,110 + -0.1 621,110 + -0.9 621,110 + -0.3 621,110 + -0.2 621,110 + +0.1 621,110 + +0.3 621,110 + +0.4 621,110 + -0.8 621,110 + -0.3 621,110 + +0.1 621,110 + +0.3 621,110 + +0.0 621,110 + -0.3 621,110 + -0.5 621,110 + -1.2 621,110 + -0.8 621,110 + -1.0 621,110 + +0.1 621,110 + -0.1 621,110 + -0.0 621,111 - +0.7 621,111 - -0.1 621,111 - -0.0 621,111 - +0.1 621,111 - -0.3 621,111 - -0.9 621,111 - +1.2 621,111 - +0.1 621,111 - +0.1 621,111 - -0.6 621,111 - -1.1 621,111 - -2.4 621,111 - -0.5 621,111 - -0.4 621,111 - -0.9 621,111 - -0.1 621,111 - -0.4 621,111 - -0.8 621,111 - -1.5 621,158 + -0.1 621,158 + +2.5 621,158 + +0.0 621,158 + -0.6 621,158 + -0.4 621,158 + +1.2 621,158 + -0.0 621,159 - -1.2 621,159 - +0.1 621,159 - +0.4 621,159 - -1.3 621,159 - +0.5 621,165 + -1.3 621,165 + -0.9 621,165 + -0.6 621,166 - -1.1 621,166 - -0.5
Or see this region's nucleotide sequence