Strain Fitness in Variovorax sp. SCN45 around GFF25

Experiment: Community=Kojac gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF24 and GFF25 are separated by 140 nucleotidesGFF25 and GFF26 are separated by 134 nucleotides GFF24 - VgrG protein, at 26,729 to 29,071 GFF24 GFF25 - Alcohol dehydrogenase (EC 1.1.1.1), at 29,212 to 30,348 GFF25 GFF26 - Esterase/lipase, at 30,483 to 31,463 GFF26 Position (kb) 29 30 31Strain fitness (log2 ratio) -2 -1 0 1at 28.305 kb on + strand, within GFF24at 28.305 kb on + strand, within GFF24at 28.306 kb on - strand, within GFF24at 28.314 kb on + strand, within GFF24at 28.314 kb on + strand, within GFF24at 28.314 kb on + strand, within GFF24at 28.518 kb on + strand, within GFF24at 28.518 kb on + strand, within GFF24at 28.578 kb on + strand, within GFF24at 28.635 kb on + strand, within GFF24at 28.662 kb on + strand, within GFF24at 28.663 kb on - strand, within GFF24at 28.663 kb on - strand, within GFF24at 28.663 kb on - strand, within GFF24at 28.698 kb on + strand, within GFF24at 28.698 kb on + strand, within GFF24at 28.699 kb on - strand, within GFF24at 28.776 kb on + strand, within GFF24at 28.777 kb on - strand, within GFF24at 28.777 kb on - strand, within GFF24at 28.806 kb on + strand, within GFF24at 28.807 kb on - strand, within GFF24at 28.807 kb on - strand, within GFF24at 28.807 kb on - strand, within GFF24at 28.812 kb on + strand, within GFF24at 28.812 kb on + strand, within GFF24at 28.812 kb on + strand, within GFF24at 28.812 kb on + strand, within GFF24at 28.813 kb on - strand, within GFF24at 28.813 kb on - strand, within GFF24at 29.213 kb on + strandat 29.213 kb on + strandat 29.214 kb on - strandat 29.241 kb on - strandat 29.241 kb on - strandat 29.241 kb on - strandat 29.335 kb on + strand, within GFF25at 30.003 kb on - strand, within GFF25at 30.003 kb on - strand, within GFF25at 30.003 kb on - strand, within GFF25at 30.003 kb on - strand, within GFF25at 30.003 kb on - strand, within GFF25at 30.110 kb on + strand, within GFF25at 30.111 kb on - strand, within GFF25at 30.111 kb on - strand, within GFF25at 30.332 kb on + strandat 30.333 kb on - strandat 30.333 kb on - strandat 30.394 kb on + strandat 30.395 kb on - strandat 30.476 kb on + strandat 30.631 kb on - strand, within GFF26at 30.735 kb on + strand, within GFF26at 30.735 kb on + strand, within GFF26at 30.771 kb on + strand, within GFF26at 31.080 kb on + strand, within GFF26at 31.081 kb on - strand, within GFF26at 31.081 kb on - strand, within GFF26at 31.179 kb on + strand, within GFF26at 31.179 kb on + strand, within GFF26at 31.180 kb on - strand, within GFF26at 31.180 kb on - strand, within GFF26at 31.180 kb on - strand, within GFF26at 31.180 kb on - strand, within GFF26at 31.309 kb on - strand, within GFF26

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1
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28,305 + GFF24 0.67 +0.8
28,305 + GFF24 0.67 +0.2
28,306 - GFF24 0.67 +0.2
28,314 + GFF24 0.68 +0.6
28,314 + GFF24 0.68 -0.4
28,314 + GFF24 0.68 -0.3
28,518 + GFF24 0.76 +0.3
28,518 + GFF24 0.76 -0.7
28,578 + GFF24 0.79 +0.8
28,635 + GFF24 0.81 -0.1
28,662 + GFF24 0.83 -0.8
28,663 - GFF24 0.83 -0.9
28,663 - GFF24 0.83 -1.5
28,663 - GFF24 0.83 +0.1
28,698 + GFF24 0.84 -0.2
28,698 + GFF24 0.84 -0.8
28,699 - GFF24 0.84 +0.0
28,776 + GFF24 0.87 -0.8
28,777 - GFF24 0.87 +0.8
28,777 - GFF24 0.87 -1.0
28,806 + GFF24 0.89 +0.5
28,807 - GFF24 0.89 +0.0
28,807 - GFF24 0.89 -0.0
28,807 - GFF24 0.89 -0.2
28,812 + GFF24 0.89 -1.4
28,812 + GFF24 0.89 -0.2
28,812 + GFF24 0.89 -0.4
28,812 + GFF24 0.89 +0.0
28,813 - GFF24 0.89 -1.3
28,813 - GFF24 0.89 -0.4
29,213 + -0.8
29,213 + -0.8
29,214 - +0.2
29,241 - -0.4
29,241 - +1.2
29,241 - +0.2
29,335 + GFF25 0.11 -0.4
30,003 - GFF25 0.70 +0.5
30,003 - GFF25 0.70 -1.2
30,003 - GFF25 0.70 -1.1
30,003 - GFF25 0.70 +0.1
30,003 - GFF25 0.70 -0.1
30,110 + GFF25 0.79 -1.1
30,111 - GFF25 0.79 -1.3
30,111 - GFF25 0.79 +0.2
30,332 + -0.2
30,333 - -0.8
30,333 - -0.3
30,394 + +0.1
30,395 - -1.1
30,476 + -0.3
30,631 - GFF26 0.15 -0.7
30,735 + GFF26 0.26 +0.4
30,735 + GFF26 0.26 -0.6
30,771 + GFF26 0.29 -0.5
31,080 + GFF26 0.61 +0.0
31,081 - GFF26 0.61 -0.9
31,081 - GFF26 0.61 -0.8
31,179 + GFF26 0.71 -0.2
31,179 + GFF26 0.71 -2.0
31,180 - GFF26 0.71 -1.7
31,180 - GFF26 0.71 -1.8
31,180 - GFF26 0.71 +1.0
31,180 - GFF26 0.71 +0.9
31,309 - GFF26 0.84 -0.8

Or see this region's nucleotide sequence