Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2225 and GFF2226 overlap by 23 nucleotides GFF2226 and GFF2227 are separated by 175 nucleotides GFF2227 and GFF2228 are separated by 18 nucleotides
GFF2225 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 286,881 to 287,924
GFF2225
GFF2226 - no description, at 287,902 to 288,405
GFF2226
GFF2227 - Tricarboxylate transport protein TctC, at 288,581 to 289,588
GFF2227
GFF2228 - glycerophosphoryl diester phosphodiesterase, at 289,607 to 291,082
GFF2228
Position (kb) 288
289
290 Strain fitness (log2 ratio) -2
-1
0
1 at 287.595 kb on + strand, within GFF2225 at 287.595 kb on + strand, within GFF2225 at 287.596 kb on - strand, within GFF2225 at 287.767 kb on - strand, within GFF2225 at 287.767 kb on - strand, within GFF2225 at 287.927 kb on + strand at 287.927 kb on + strand at 287.927 kb on + strand at 287.927 kb on + strand at 287.927 kb on + strand at 287.928 kb on - strand at 287.928 kb on - strand at 287.928 kb on - strand at 287.930 kb on + strand at 287.930 kb on + strand at 287.931 kb on - strand at 287.954 kb on + strand, within GFF2226 at 287.955 kb on - strand, within GFF2226 at 287.955 kb on - strand, within GFF2226 at 288.002 kb on + strand, within GFF2226 at 288.003 kb on - strand, within GFF2226 at 288.003 kb on - strand, within GFF2226 at 288.248 kb on + strand, within GFF2226 at 288.248 kb on + strand, within GFF2226 at 288.248 kb on + strand, within GFF2226 at 288.359 kb on + strand at 288.359 kb on + strand at 288.360 kb on - strand at 288.360 kb on - strand at 288.360 kb on - strand at 288.469 kb on + strand at 288.469 kb on + strand at 288.469 kb on + strand at 288.469 kb on + strand at 288.470 kb on - strand at 288.530 kb on + strand at 289.076 kb on + strand, within GFF2227 at 289.077 kb on - strand, within GFF2227 at 289.077 kb on - strand, within GFF2227 at 289.163 kb on + strand, within GFF2227 at 289.164 kb on - strand, within GFF2227 at 289.914 kb on + strand, within GFF2228 at 289.914 kb on + strand, within GFF2228 at 289.914 kb on + strand, within GFF2228 at 289.914 kb on + strand, within GFF2228 at 289.914 kb on + strand, within GFF2228 at 289.914 kb on + strand, within GFF2228 at 289.914 kb on + strand, within GFF2228 at 289.914 kb on + strand, within GFF2228 at 289.915 kb on - strand, within GFF2228 at 289.915 kb on - strand, within GFF2228 at 289.915 kb on - strand, within GFF2228 at 289.915 kb on - strand, within GFF2228 at 289.915 kb on - strand, within GFF2228 at 289.915 kb on - strand, within GFF2228 at 289.944 kb on + strand, within GFF2228 at 290.064 kb on + strand, within GFF2228 at 290.064 kb on + strand, within GFF2228 at 290.065 kb on - strand, within GFF2228 at 290.065 kb on - strand, within GFF2228 at 290.103 kb on + strand, within GFF2228 at 290.103 kb on + strand, within GFF2228 at 290.104 kb on - strand, within GFF2228 at 290.334 kb on + strand, within GFF2228 at 290.334 kb on + strand, within GFF2228 at 290.334 kb on + strand, within GFF2228 at 290.335 kb on - strand, within GFF2228 at 290.335 kb on - strand, within GFF2228 at 290.490 kb on + strand, within GFF2228 at 290.491 kb on - strand, within GFF2228 at 290.500 kb on - strand, within GFF2228
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 287,595 + GFF2225 0.68 -0.4 287,595 + GFF2225 0.68 -0.4 287,596 - GFF2225 0.68 -1.2 287,767 - GFF2225 0.85 -0.6 287,767 - GFF2225 0.85 -0.2 287,927 + -0.5 287,927 + -0.3 287,927 + -0.4 287,927 + +0.5 287,927 + -0.6 287,928 - -0.9 287,928 - -0.7 287,928 - +0.2 287,930 + -0.4 287,930 + -0.5 287,931 - +0.4 287,954 + GFF2226 0.10 -0.5 287,955 - GFF2226 0.11 -0.4 287,955 - GFF2226 0.11 +0.0 288,002 + GFF2226 0.20 +0.5 288,003 - GFF2226 0.20 -0.4 288,003 - GFF2226 0.20 -0.4 288,248 + GFF2226 0.69 -0.3 288,248 + GFF2226 0.69 -0.5 288,248 + GFF2226 0.69 -0.5 288,359 + +0.7 288,359 + +0.1 288,360 - -0.8 288,360 - -0.1 288,360 - -0.3 288,469 + -0.4 288,469 + +0.0 288,469 + -0.3 288,469 + +0.0 288,470 - -0.6 288,530 + +1.1 289,076 + GFF2227 0.49 +0.7 289,077 - GFF2227 0.49 -1.3 289,077 - GFF2227 0.49 -0.4 289,163 + GFF2227 0.58 -0.1 289,164 - GFF2227 0.58 -1.1 289,914 + GFF2228 0.21 -0.6 289,914 + GFF2228 0.21 +1.7 289,914 + GFF2228 0.21 +0.7 289,914 + GFF2228 0.21 -0.9 289,914 + GFF2228 0.21 -1.1 289,914 + GFF2228 0.21 -0.6 289,914 + GFF2228 0.21 +0.3 289,914 + GFF2228 0.21 +0.3 289,915 - GFF2228 0.21 -0.3 289,915 - GFF2228 0.21 -0.7 289,915 - GFF2228 0.21 +0.1 289,915 - GFF2228 0.21 -0.3 289,915 - GFF2228 0.21 -1.5 289,915 - GFF2228 0.21 -0.7 289,944 + GFF2228 0.23 -2.2 290,064 + GFF2228 0.31 -0.2 290,064 + GFF2228 0.31 -0.6 290,065 - GFF2228 0.31 -0.6 290,065 - GFF2228 0.31 +0.6 290,103 + GFF2228 0.34 -0.8 290,103 + GFF2228 0.34 +0.1 290,104 - GFF2228 0.34 -1.2 290,334 + GFF2228 0.49 +0.1 290,334 + GFF2228 0.49 -0.5 290,334 + GFF2228 0.49 -0.6 290,335 - GFF2228 0.49 -1.5 290,335 - GFF2228 0.49 +0.2 290,490 + GFF2228 0.60 -0.1 290,491 - GFF2228 0.60 -0.4 290,500 - GFF2228 0.61 +0.3
Or see this region's nucleotide sequence