Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2205 and GFF2206 overlap by 4 nucleotides GFF2206 and GFF2207 overlap by 4 nucleotides GFF2207 and GFF2208 overlap by 8 nucleotides
GFF2205 - hypothetical protein, at 266,597 to 267,580
GFF2205
GFF2206 - Type II/IV secretion system protein TadC, associated with Flp pilus assembly, at 267,577 to 268,539
GFF2206
GFF2207 - Flp pilus assembly protein TadB, at 268,536 to 269,534
GFF2207
GFF2208 - Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily, at 269,527 to 270,840
GFF2208
Position (kb) 268
269
270 Strain fitness (log2 ratio) -1
0
1 at 267.563 kb on + strand at 267.564 kb on - strand at 267.887 kb on + strand, within GFF2206 at 267.922 kb on + strand, within GFF2206 at 267.923 kb on - strand, within GFF2206 at 267.923 kb on - strand, within GFF2206 at 268.560 kb on + strand at 268.560 kb on + strand at 268.560 kb on + strand at 268.560 kb on + strand at 268.560 kb on + strand at 268.561 kb on - strand at 268.600 kb on + strand at 268.600 kb on + strand at 268.601 kb on - strand at 268.601 kb on - strand at 268.601 kb on - strand at 268.604 kb on + strand at 268.604 kb on + strand at 268.605 kb on - strand at 268.659 kb on - strand, within GFF2207 at 269.037 kb on + strand, within GFF2207 at 269.041 kb on + strand, within GFF2207 at 269.042 kb on - strand, within GFF2207 at 269.172 kb on + strand, within GFF2207 at 269.173 kb on - strand, within GFF2207 at 269.173 kb on - strand, within GFF2207 at 269.173 kb on - strand, within GFF2207 at 269.300 kb on + strand, within GFF2207 at 270.100 kb on + strand, within GFF2208 at 270.100 kb on + strand, within GFF2208 at 270.101 kb on - strand, within GFF2208 at 270.132 kb on - strand, within GFF2208 at 270.132 kb on - strand, within GFF2208 at 270.132 kb on - strand, within GFF2208 at 270.132 kb on - strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 267,563 + +0.7 267,564 - -1.4 267,887 + GFF2206 0.32 +0.4 267,922 + GFF2206 0.36 +0.2 267,923 - GFF2206 0.36 -0.7 267,923 - GFF2206 0.36 -0.3 268,560 + -0.7 268,560 + +1.7 268,560 + +0.4 268,560 + +0.7 268,560 + -0.2 268,561 - -0.8 268,600 + -0.5 268,600 + +0.4 268,601 - +0.6 268,601 - +0.0 268,601 - +0.4 268,604 + +0.4 268,604 + +0.1 268,605 - -0.4 268,659 - GFF2207 0.12 +0.3 269,037 + GFF2207 0.50 -1.0 269,041 + GFF2207 0.51 +0.7 269,042 - GFF2207 0.51 -0.7 269,172 + GFF2207 0.64 +1.7 269,173 - GFF2207 0.64 +1.0 269,173 - GFF2207 0.64 +1.0 269,173 - GFF2207 0.64 -0.9 269,300 + GFF2207 0.76 +0.4 270,100 + GFF2208 0.44 -1.1 270,100 + GFF2208 0.44 -0.3 270,101 - GFF2208 0.44 -1.2 270,132 - GFF2208 0.46 -0.1 270,132 - GFF2208 0.46 -1.1 270,132 - GFF2208 0.46 -0.5 270,132 - GFF2208 0.46 +0.0 270,506 + GFF2208 0.75 -0.7 270,506 + GFF2208 0.75 +0.9 270,506 + GFF2208 0.75 -1.3 270,506 + GFF2208 0.75 -0.0 270,506 + GFF2208 0.75 +0.1 270,506 + GFF2208 0.75 +0.9 270,506 + GFF2208 0.75 +0.2 270,506 + GFF2208 0.75 +0.5 270,506 + GFF2208 0.75 +0.3 270,507 - GFF2208 0.75 +0.8 270,507 - GFF2208 0.75 -0.3 270,507 - GFF2208 0.75 -0.0 270,507 - GFF2208 0.75 +0.6 270,507 - GFF2208 0.75 -0.3 270,507 - GFF2208 0.75 +0.1 270,507 - GFF2208 0.75 -0.4 270,507 - GFF2208 0.75 -1.0 270,507 - GFF2208 0.75 -0.5 270,507 - GFF2208 0.75 -0.0 270,507 - GFF2208 0.75 -0.6
Or see this region's nucleotide sequence