Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2108 and GFF2109 are separated by 19 nucleotides GFF2109 and GFF2110 are separated by 56 nucleotides GFF2110 and GFF2111 are separated by 55 nucleotides
GFF2108 - hypothetical protein, at 158,109 to 159,125
GFF2108
GFF2109 - FIG00454067: hypothetical protein, at 159,145 to 159,390
GFF2109
GFF2110 - no description, at 159,447 to 160,289
GFF2110
GFF2111 - Permease of the drug/metabolite transporter (DMT) superfamily, at 160,345 to 161,250
GFF2111
Position (kb) 159
160 Strain fitness (log2 ratio) -2
-1
0
1 at 158.509 kb on + strand, within GFF2108 at 158.526 kb on - strand, within GFF2108 at 158.720 kb on - strand, within GFF2108 at 158.720 kb on - strand, within GFF2108 at 159.146 kb on + strand at 159.146 kb on + strand at 159.147 kb on - strand at 159.296 kb on + strand, within GFF2109 at 159.296 kb on + strand, within GFF2109 at 159.374 kb on + strand at 159.375 kb on - strand at 159.376 kb on - strand at 159.460 kb on + strand at 159.460 kb on + strand at 159.461 kb on - strand at 159.498 kb on + strand at 159.535 kb on + strand, within GFF2110 at 159.535 kb on + strand, within GFF2110 at 159.535 kb on + strand, within GFF2110 at 159.535 kb on + strand, within GFF2110 at 159.535 kb on + strand, within GFF2110 at 159.536 kb on + strand, within GFF2110 at 159.536 kb on - strand, within GFF2110 at 159.542 kb on - strand, within GFF2110 at 159.607 kb on + strand, within GFF2110 at 159.629 kb on - strand, within GFF2110 at 159.779 kb on - strand, within GFF2110 at 159.779 kb on - strand, within GFF2110 at 159.965 kb on - strand, within GFF2110 at 160.057 kb on + strand, within GFF2110 at 160.057 kb on + strand, within GFF2110 at 160.057 kb on + strand, within GFF2110 at 160.058 kb on - strand, within GFF2110 at 160.058 kb on - strand, within GFF2110 at 160.058 kb on - strand, within GFF2110
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 158,509 + GFF2108 0.39 -0.6 158,526 - GFF2108 0.41 +0.0 158,720 - GFF2108 0.60 -0.7 158,720 - GFF2108 0.60 -1.8 159,146 + +0.1 159,146 + +0.3 159,147 - -1.6 159,296 + GFF2109 0.61 +0.7 159,296 + GFF2109 0.61 -1.1 159,374 + -0.5 159,375 - -1.7 159,376 - +0.3 159,460 + -0.3 159,460 + -2.4 159,461 - -0.3 159,498 + -0.0 159,535 + GFF2110 0.10 -0.6 159,535 + GFF2110 0.10 -0.3 159,535 + GFF2110 0.10 -1.6 159,535 + GFF2110 0.10 -0.3 159,535 + GFF2110 0.10 -1.1 159,536 + GFF2110 0.11 -0.1 159,536 - GFF2110 0.11 -0.3 159,542 - GFF2110 0.11 -0.6 159,607 + GFF2110 0.19 -0.3 159,629 - GFF2110 0.22 -0.1 159,779 - GFF2110 0.39 +0.4 159,779 - GFF2110 0.39 -0.1 159,965 - GFF2110 0.61 -0.7 160,057 + GFF2110 0.72 -0.3 160,057 + GFF2110 0.72 -0.4 160,057 + GFF2110 0.72 +0.1 160,058 - GFF2110 0.72 +1.1 160,058 - GFF2110 0.72 +0.1 160,058 - GFF2110 0.72 +0.1
Or see this region's nucleotide sequence