Strain Fitness in Variovorax sp. SCN45 around GFF2106

Experiment: Community=Kojac gum; Passage=1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2105 and GFF2106 are separated by 78 nucleotidesGFF2106 and GFF2107 are separated by 32 nucleotidesGFF2107 and GFF2108 overlap by 4 nucleotides GFF2105 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 155,309 to 156,487 GFF2105 GFF2106 - hypothetical protein, at 156,566 to 157,726 GFF2106 GFF2107 - no description, at 157,759 to 158,112 GFF2107 GFF2108 - hypothetical protein, at 158,109 to 159,125 GFF2108 Position (kb) 156 157 158Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 155.723 kb on + strand, within GFF2105at 155.723 kb on + strand, within GFF2105at 155.723 kb on + strand, within GFF2105at 155.804 kb on + strand, within GFF2105at 155.834 kb on + strand, within GFF2105at 155.834 kb on + strand, within GFF2105at 155.835 kb on - strand, within GFF2105at 155.901 kb on + strand, within GFF2105at 155.902 kb on - strand, within GFF2105at 156.245 kb on + strand, within GFF2105at 156.245 kb on + strand, within GFF2105at 156.246 kb on - strand, within GFF2105at 156.246 kb on - strand, within GFF2105at 156.246 kb on - strand, within GFF2105at 156.246 kb on - strand, within GFF2105at 156.506 kb on + strandat 156.547 kb on + strandat 156.548 kb on - strandat 156.548 kb on - strandat 156.548 kb on - strandat 156.548 kb on - strandat 156.554 kb on + strandat 156.554 kb on + strandat 156.755 kb on + strand, within GFF2106at 156.755 kb on + strand, within GFF2106at 156.755 kb on + strand, within GFF2106at 156.755 kb on + strand, within GFF2106at 156.755 kb on + strand, within GFF2106at 156.755 kb on + strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.818 kb on + strand, within GFF2106at 156.818 kb on + strand, within GFF2106at 156.818 kb on + strand, within GFF2106at 156.818 kb on + strand, within GFF2106at 156.819 kb on - strand, within GFF2106at 156.998 kb on + strand, within GFF2106at 156.998 kb on + strand, within GFF2106at 156.998 kb on + strand, within GFF2106at 156.998 kb on + strand, within GFF2106at 156.998 kb on + strand, within GFF2106at 157.148 kb on + strand, within GFF2106at 157.148 kb on + strand, within GFF2106at 157.148 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.161 kb on - strand, within GFF2106at 157.161 kb on - strand, within GFF2106at 157.161 kb on - strand, within GFF2106at 157.161 kb on - strand, within GFF2106at 157.235 kb on + strand, within GFF2106at 157.235 kb on + strand, within GFF2106at 157.236 kb on - strand, within GFF2106at 157.236 kb on - strand, within GFF2106at 157.236 kb on - strand, within GFF2106at 157.236 kb on - strand, within GFF2106at 157.679 kb on + strandat 157.680 kb on - strandat 157.680 kb on - strandat 157.808 kb on + strand, within GFF2107at 157.808 kb on + strand, within GFF2107at 157.808 kb on + strand, within GFF2107at 157.809 kb on - strand, within GFF2107at 157.847 kb on - strand, within GFF2107at 158.097 kb on - strandat 158.509 kb on + strand, within GFF2108at 158.526 kb on - strand, within GFF2108at 158.720 kb on - strand, within GFF2108at 158.720 kb on - strand, within GFF2108

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1
remove
155,723 + GFF2105 0.35 +1.7
155,723 + GFF2105 0.35 -0.3
155,723 + GFF2105 0.35 +0.5
155,804 + GFF2105 0.42 -0.2
155,834 + GFF2105 0.45 +0.7
155,834 + GFF2105 0.45 +0.7
155,835 - GFF2105 0.45 +0.1
155,901 + GFF2105 0.50 +0.6
155,902 - GFF2105 0.50 -0.5
156,245 + GFF2105 0.79 +0.2
156,245 + GFF2105 0.79 +0.2
156,246 - GFF2105 0.79 -1.1
156,246 - GFF2105 0.79 -0.2
156,246 - GFF2105 0.79 -0.6
156,246 - GFF2105 0.79 -1.5
156,506 + +1.7
156,547 + +0.0
156,548 - +0.2
156,548 - +0.4
156,548 - +0.3
156,548 - -0.7
156,554 + +0.4
156,554 + -0.4
156,755 + GFF2106 0.16 -0.2
156,755 + GFF2106 0.16 +0.3
156,755 + GFF2106 0.16 +1.4
156,755 + GFF2106 0.16 -2.0
156,755 + GFF2106 0.16 -0.7
156,755 + GFF2106 0.16 +0.1
156,756 - GFF2106 0.16 +0.3
156,756 - GFF2106 0.16 +0.2
156,756 - GFF2106 0.16 -0.7
156,756 - GFF2106 0.16 +0.3
156,756 - GFF2106 0.16 +0.7
156,756 - GFF2106 0.16 -1.2
156,756 - GFF2106 0.16 -0.3
156,756 - GFF2106 0.16 -0.4
156,756 - GFF2106 0.16 +0.7
156,756 - GFF2106 0.16 +0.6
156,818 + GFF2106 0.22 -0.6
156,818 + GFF2106 0.22 +0.3
156,818 + GFF2106 0.22 +0.0
156,818 + GFF2106 0.22 -0.5
156,819 - GFF2106 0.22 -2.2
156,998 + GFF2106 0.37 -0.4
156,998 + GFF2106 0.37 -0.0
156,998 + GFF2106 0.37 -0.2
156,998 + GFF2106 0.37 -1.3
156,998 + GFF2106 0.37 -0.6
157,148 + GFF2106 0.50 -0.2
157,148 + GFF2106 0.50 -0.8
157,148 + GFF2106 0.50 -0.2
157,160 + GFF2106 0.51 -0.4
157,160 + GFF2106 0.51 -0.2
157,160 + GFF2106 0.51 -0.6
157,160 + GFF2106 0.51 -3.3
157,160 + GFF2106 0.51 -1.3
157,160 + GFF2106 0.51 -0.9
157,160 + GFF2106 0.51 +0.1
157,160 + GFF2106 0.51 -0.3
157,160 + GFF2106 0.51 +0.1
157,160 + GFF2106 0.51 +1.1
157,161 - GFF2106 0.51 -0.6
157,161 - GFF2106 0.51 -0.7
157,161 - GFF2106 0.51 -1.6
157,161 - GFF2106 0.51 -0.8
157,235 + GFF2106 0.58 -0.6
157,235 + GFF2106 0.58 -1.3
157,236 - GFF2106 0.58 -0.3
157,236 - GFF2106 0.58 +0.7
157,236 - GFF2106 0.58 -0.2
157,236 - GFF2106 0.58 -0.4
157,679 + +2.0
157,680 - -0.0
157,680 - -0.0
157,808 + GFF2107 0.14 -0.0
157,808 + GFF2107 0.14 +0.7
157,808 + GFF2107 0.14 +0.2
157,809 - GFF2107 0.14 -0.5
157,847 - GFF2107 0.25 -0.9
158,097 - -0.1
158,509 + GFF2108 0.39 -0.6
158,526 - GFF2108 0.41 +0.0
158,720 - GFF2108 0.60 -0.7
158,720 - GFF2108 0.60 -1.8

Or see this region's nucleotide sequence