Strain Fitness in Variovorax sp. SCN45 around GFF2105

Experiment: Community=Kojac gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2103 and GFF2104 are separated by 138 nucleotidesGFF2104 and GFF2105 are separated by 32 nucleotidesGFF2105 and GFF2106 are separated by 78 nucleotides GFF2103 - Regulatory protein, LuxR:Tetratricopeptide TPR_4, at 151,668 to 154,355 GFF2103 GFF2104 - 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35), at 154,494 to 155,276 GFF2104 GFF2105 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 155,309 to 156,487 GFF2105 GFF2106 - hypothetical protein, at 156,566 to 157,726 GFF2106 Position (kb) 155 156 157Strain fitness (log2 ratio) -3 -2 -1 0 1at 154.472 kb on + strandat 154.473 kb on - strandat 154.473 kb on - strandat 154.473 kb on - strandat 154.989 kb on + strand, within GFF2104at 154.989 kb on + strand, within GFF2104at 154.990 kb on - strand, within GFF2104at 155.184 kb on + strand, within GFF2104at 155.220 kb on + strandat 155.221 kb on - strandat 155.723 kb on + strand, within GFF2105at 155.723 kb on + strand, within GFF2105at 155.723 kb on + strand, within GFF2105at 155.804 kb on + strand, within GFF2105at 155.834 kb on + strand, within GFF2105at 155.834 kb on + strand, within GFF2105at 155.835 kb on - strand, within GFF2105at 155.901 kb on + strand, within GFF2105at 155.902 kb on - strand, within GFF2105at 156.245 kb on + strand, within GFF2105at 156.245 kb on + strand, within GFF2105at 156.246 kb on - strand, within GFF2105at 156.246 kb on - strand, within GFF2105at 156.246 kb on - strand, within GFF2105at 156.246 kb on - strand, within GFF2105at 156.506 kb on + strandat 156.547 kb on + strandat 156.548 kb on - strandat 156.548 kb on - strandat 156.548 kb on - strandat 156.548 kb on - strandat 156.554 kb on + strandat 156.554 kb on + strandat 156.755 kb on + strand, within GFF2106at 156.755 kb on + strand, within GFF2106at 156.755 kb on + strand, within GFF2106at 156.755 kb on + strand, within GFF2106at 156.755 kb on + strand, within GFF2106at 156.755 kb on + strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.818 kb on + strand, within GFF2106at 156.818 kb on + strand, within GFF2106at 156.818 kb on + strand, within GFF2106at 156.818 kb on + strand, within GFF2106at 156.819 kb on - strand, within GFF2106at 156.998 kb on + strand, within GFF2106at 156.998 kb on + strand, within GFF2106at 156.998 kb on + strand, within GFF2106at 156.998 kb on + strand, within GFF2106at 156.998 kb on + strand, within GFF2106at 157.148 kb on + strand, within GFF2106at 157.148 kb on + strand, within GFF2106at 157.148 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.161 kb on - strand, within GFF2106at 157.161 kb on - strand, within GFF2106at 157.161 kb on - strand, within GFF2106at 157.161 kb on - strand, within GFF2106at 157.235 kb on + strand, within GFF2106at 157.235 kb on + strand, within GFF2106at 157.236 kb on - strand, within GFF2106at 157.236 kb on - strand, within GFF2106at 157.236 kb on - strand, within GFF2106at 157.236 kb on - strand, within GFF2106

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1
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154,472 + +0.0
154,473 - -0.7
154,473 - -2.1
154,473 - +0.7
154,989 + GFF2104 0.63 +0.8
154,989 + GFF2104 0.63 -0.8
154,990 - GFF2104 0.63 -0.3
155,184 + GFF2104 0.88 -1.3
155,220 + -0.5
155,221 - -0.5
155,723 + GFF2105 0.35 +1.7
155,723 + GFF2105 0.35 -0.3
155,723 + GFF2105 0.35 +0.5
155,804 + GFF2105 0.42 -0.2
155,834 + GFF2105 0.45 +0.7
155,834 + GFF2105 0.45 +0.7
155,835 - GFF2105 0.45 +0.1
155,901 + GFF2105 0.50 +0.6
155,902 - GFF2105 0.50 -0.5
156,245 + GFF2105 0.79 +0.2
156,245 + GFF2105 0.79 +0.2
156,246 - GFF2105 0.79 -1.1
156,246 - GFF2105 0.79 -0.2
156,246 - GFF2105 0.79 -0.6
156,246 - GFF2105 0.79 -1.5
156,506 + +1.7
156,547 + +0.0
156,548 - +0.2
156,548 - +0.4
156,548 - +0.3
156,548 - -0.7
156,554 + +0.4
156,554 + -0.4
156,755 + GFF2106 0.16 -0.2
156,755 + GFF2106 0.16 +0.3
156,755 + GFF2106 0.16 +1.4
156,755 + GFF2106 0.16 -2.0
156,755 + GFF2106 0.16 -0.7
156,755 + GFF2106 0.16 +0.1
156,756 - GFF2106 0.16 +0.3
156,756 - GFF2106 0.16 +0.2
156,756 - GFF2106 0.16 -0.7
156,756 - GFF2106 0.16 +0.3
156,756 - GFF2106 0.16 +0.7
156,756 - GFF2106 0.16 -1.2
156,756 - GFF2106 0.16 -0.3
156,756 - GFF2106 0.16 -0.4
156,756 - GFF2106 0.16 +0.7
156,756 - GFF2106 0.16 +0.6
156,818 + GFF2106 0.22 -0.6
156,818 + GFF2106 0.22 +0.3
156,818 + GFF2106 0.22 +0.0
156,818 + GFF2106 0.22 -0.5
156,819 - GFF2106 0.22 -2.2
156,998 + GFF2106 0.37 -0.4
156,998 + GFF2106 0.37 -0.0
156,998 + GFF2106 0.37 -0.2
156,998 + GFF2106 0.37 -1.3
156,998 + GFF2106 0.37 -0.6
157,148 + GFF2106 0.50 -0.2
157,148 + GFF2106 0.50 -0.8
157,148 + GFF2106 0.50 -0.2
157,160 + GFF2106 0.51 -0.4
157,160 + GFF2106 0.51 -0.2
157,160 + GFF2106 0.51 -0.6
157,160 + GFF2106 0.51 -3.3
157,160 + GFF2106 0.51 -1.3
157,160 + GFF2106 0.51 -0.9
157,160 + GFF2106 0.51 +0.1
157,160 + GFF2106 0.51 -0.3
157,160 + GFF2106 0.51 +0.1
157,160 + GFF2106 0.51 +1.1
157,161 - GFF2106 0.51 -0.6
157,161 - GFF2106 0.51 -0.7
157,161 - GFF2106 0.51 -1.6
157,161 - GFF2106 0.51 -0.8
157,235 + GFF2106 0.58 -0.6
157,235 + GFF2106 0.58 -1.3
157,236 - GFF2106 0.58 -0.3
157,236 - GFF2106 0.58 +0.7
157,236 - GFF2106 0.58 -0.2
157,236 - GFF2106 0.58 -0.4

Or see this region's nucleotide sequence