Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2000 and GFF2001 are separated by 32 nucleotides GFF2001 and GFF2002 are separated by 54 nucleotides GFF2002 and GFF2003 are separated by 101 nucleotides
GFF2000 - Phosphomethylpyrimidine synthase ThiC (EC 4.1.99.17), at 43,922 to 45,805
GFF2000
GFF2001 - Putative phosphatase YieH, at 45,838 to 46,530
GFF2001
GFF2002 - Thioredoxin related protein PA2694, at 46,585 to 46,911
GFF2002
GFF2003 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 47,013 to 48,014
GFF2003
Position (kb) 46
47 Strain fitness (log2 ratio) -1
0
1 at 45.779 kb on + strand at 45.779 kb on + strand at 45.779 kb on + strand at 45.779 kb on + strand at 45.779 kb on + strand at 45.779 kb on + strand at 45.779 kb on + strand at 45.779 kb on + strand at 45.779 kb on + strand at 45.779 kb on + strand at 45.779 kb on + strand at 45.779 kb on + strand at 45.780 kb on + strand at 45.780 kb on - strand at 45.780 kb on - strand at 45.780 kb on - strand at 45.780 kb on - strand at 45.780 kb on - strand at 45.780 kb on - strand at 45.780 kb on - strand at 45.826 kb on + strand at 45.826 kb on + strand at 45.826 kb on + strand at 45.826 kb on + strand at 45.827 kb on - strand at 45.828 kb on - strand at 46.294 kb on + strand, within GFF2001 at 46.294 kb on + strand, within GFF2001 at 46.294 kb on + strand, within GFF2001 at 46.294 kb on + strand, within GFF2001 at 46.294 kb on + strand, within GFF2001 at 46.294 kb on + strand, within GFF2001 at 46.295 kb on - strand, within GFF2001 at 46.295 kb on - strand, within GFF2001 at 46.295 kb on - strand, within GFF2001 at 46.295 kb on - strand, within GFF2001 at 46.295 kb on - strand, within GFF2001 at 46.405 kb on + strand, within GFF2001 at 46.597 kb on + strand at 46.598 kb on - strand at 46.598 kb on - strand at 46.598 kb on - strand at 46.727 kb on - strand, within GFF2002 at 46.727 kb on - strand, within GFF2002 at 46.967 kb on + strand at 46.968 kb on - strand at 46.968 kb on - strand at 46.968 kb on - strand at 47.033 kb on - strand at 47.043 kb on + strand at 47.043 kb on + strand at 47.044 kb on - strand at 47.253 kb on + strand, within GFF2003 at 47.253 kb on + strand, within GFF2003 at 47.332 kb on - strand, within GFF2003 at 47.466 kb on + strand, within GFF2003 at 47.466 kb on + strand, within GFF2003 at 47.466 kb on + strand, within GFF2003 at 47.466 kb on + strand, within GFF2003 at 47.466 kb on + strand, within GFF2003 at 47.466 kb on + strand, within GFF2003 at 47.467 kb on - strand, within GFF2003 at 47.467 kb on - strand, within GFF2003 at 47.467 kb on - strand, within GFF2003 at 47.467 kb on - strand, within GFF2003 at 47.472 kb on + strand, within GFF2003 at 47.802 kb on + strand, within GFF2003 at 47.880 kb on + strand, within GFF2003 at 47.881 kb on - strand, within GFF2003 at 47.898 kb on + strand, within GFF2003 at 47.898 kb on + strand, within GFF2003 at 47.898 kb on + strand, within GFF2003 at 47.898 kb on + strand, within GFF2003 at 47.899 kb on - strand, within GFF2003 at 47.899 kb on - strand, within GFF2003
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 45,779 + +0.6 45,779 + -0.5 45,779 + -0.1 45,779 + -0.2 45,779 + -0.8 45,779 + -0.1 45,779 + -0.3 45,779 + +1.7 45,779 + +1.7 45,779 + -0.3 45,779 + +0.2 45,779 + -1.6 45,780 + -0.2 45,780 - -0.1 45,780 - +1.2 45,780 - -1.0 45,780 - -0.5 45,780 - -1.3 45,780 - +0.4 45,780 - -0.3 45,826 + -0.3 45,826 + -1.1 45,826 + -0.0 45,826 + -0.4 45,827 - +0.0 45,828 - +0.0 46,294 + GFF2001 0.66 -0.6 46,294 + GFF2001 0.66 -0.1 46,294 + GFF2001 0.66 +1.5 46,294 + GFF2001 0.66 -0.1 46,294 + GFF2001 0.66 -0.6 46,294 + GFF2001 0.66 -1.1 46,295 - GFF2001 0.66 +0.4 46,295 - GFF2001 0.66 -1.0 46,295 - GFF2001 0.66 +0.3 46,295 - GFF2001 0.66 +0.3 46,295 - GFF2001 0.66 +1.7 46,405 + GFF2001 0.82 +0.3 46,597 + -0.5 46,598 - +0.4 46,598 - +0.6 46,598 - +0.7 46,727 - GFF2002 0.43 -0.6 46,727 - GFF2002 0.43 -0.8 46,967 + -0.4 46,968 - +1.2 46,968 - -0.4 46,968 - +0.3 47,033 - -0.5 47,043 + -0.4 47,043 + -0.9 47,044 - +1.0 47,253 + GFF2003 0.24 -0.0 47,253 + GFF2003 0.24 +0.5 47,332 - GFF2003 0.32 -0.3 47,466 + GFF2003 0.45 +1.2 47,466 + GFF2003 0.45 +0.2 47,466 + GFF2003 0.45 +1.3 47,466 + GFF2003 0.45 -0.2 47,466 + GFF2003 0.45 -1.1 47,466 + GFF2003 0.45 +0.7 47,467 - GFF2003 0.45 +0.3 47,467 - GFF2003 0.45 -0.3 47,467 - GFF2003 0.45 -0.1 47,467 - GFF2003 0.45 -1.0 47,472 + GFF2003 0.46 +0.4 47,802 + GFF2003 0.79 -0.9 47,880 + GFF2003 0.87 -0.9 47,881 - GFF2003 0.87 +0.5 47,898 + GFF2003 0.88 +0.3 47,898 + GFF2003 0.88 +0.7 47,898 + GFF2003 0.88 +0.1 47,898 + GFF2003 0.88 -0.8 47,899 - GFF2003 0.88 +1.7 47,899 - GFF2003 0.88 -0.3
Or see this region's nucleotide sequence