Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1949 and GFF1950 are separated by 44 nucleotides GFF1950 and GFF1951 are separated by 89 nucleotides GFF1951 and GFF1952 are separated by 44 nucleotides GFF1952 and GFF1953 overlap by 4 nucleotides
GFF1949 - no description, at 645,049 to 645,165
GFF1949
GFF1950 - no description, at 645,210 to 645,329
GFF1950
GFF1951 - no description, at 645,419 to 645,769
GFF1951
GFF1952 - Metallophosphoesterase, at 645,814 to 646,527
GFF1952
GFF1953 - hypothetical protein, at 646,524 to 647,171
GFF1953
Position (kb) 645
646 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 644.429 kb on + strand at 644.437 kb on + strand at 644.451 kb on + strand at 644.451 kb on + strand at 644.616 kb on + strand at 644.616 kb on + strand at 644.616 kb on + strand at 644.617 kb on - strand at 644.617 kb on - strand at 644.617 kb on - strand at 644.617 kb on - strand at 644.617 kb on - strand at 644.617 kb on - strand at 644.704 kb on - strand at 644.708 kb on + strand at 644.708 kb on + strand at 644.709 kb on - strand at 644.709 kb on - strand at 644.709 kb on - strand at 644.709 kb on - strand at 644.709 kb on - strand at 644.736 kb on - strand at 644.759 kb on + strand at 644.759 kb on + strand at 644.760 kb on - strand at 644.760 kb on - strand at 644.760 kb on - strand at 644.767 kb on + strand at 644.767 kb on + strand at 644.767 kb on + strand at 644.767 kb on + strand at 644.768 kb on - strand at 644.768 kb on - strand at 644.768 kb on - strand at 644.768 kb on - strand at 644.966 kb on - strand at 644.989 kb on + strand at 644.989 kb on + strand at 644.990 kb on - strand at 645.000 kb on + strand at 645.000 kb on + strand at 645.000 kb on + strand at 645.000 kb on + strand at 645.000 kb on + strand at 645.000 kb on + strand at 645.001 kb on - strand at 645.001 kb on - strand at 645.001 kb on - strand at 645.001 kb on - strand at 645.050 kb on + strand at 645.050 kb on + strand at 645.050 kb on + strand at 645.121 kb on - strand, within GFF1949 at 645.188 kb on + strand at 645.196 kb on - strand at 645.203 kb on + strand at 645.451 kb on + strand at 645.451 kb on + strand at 645.451 kb on + strand at 645.451 kb on + strand at 645.451 kb on + strand at 645.451 kb on + strand at 645.451 kb on + strand at 645.451 kb on + strand at 645.452 kb on - strand at 645.452 kb on - strand at 645.452 kb on - strand at 645.452 kb on - strand at 645.452 kb on - strand at 645.570 kb on - strand, within GFF1951 at 645.570 kb on - strand, within GFF1951 at 645.768 kb on - strand at 645.768 kb on - strand at 645.896 kb on + strand, within GFF1952 at 645.896 kb on + strand, within GFF1952 at 645.896 kb on + strand, within GFF1952 at 645.993 kb on + strand, within GFF1952 at 645.993 kb on + strand, within GFF1952 at 645.993 kb on + strand, within GFF1952 at 645.994 kb on - strand, within GFF1952 at 645.994 kb on - strand, within GFF1952 at 646.010 kb on - strand, within GFF1952 at 646.016 kb on + strand, within GFF1952 at 646.115 kb on + strand, within GFF1952 at 646.249 kb on - strand, within GFF1952 at 646.249 kb on - strand, within GFF1952 at 646.414 kb on + strand, within GFF1952 at 646.414 kb on + strand, within GFF1952 at 646.414 kb on + strand, within GFF1952 at 646.415 kb on - strand, within GFF1952 at 646.415 kb on - strand, within GFF1952 at 646.415 kb on - strand, within GFF1952 at 646.415 kb on - strand, within GFF1952 at 646.415 kb on - strand, within GFF1952 at 646.520 kb on + strand at 646.520 kb on + strand at 646.536 kb on + strand at 646.536 kb on + strand at 646.536 kb on + strand at 646.536 kb on + strand at 646.536 kb on + strand at 646.536 kb on + strand at 646.537 kb on - strand at 646.568 kb on + strand at 646.622 kb on + strand, within GFF1953 at 646.622 kb on + strand, within GFF1953 at 646.622 kb on + strand, within GFF1953 at 646.628 kb on + strand, within GFF1953 at 646.628 kb on + strand, within GFF1953 at 646.629 kb on - strand, within GFF1953 at 646.705 kb on - strand, within GFF1953 at 646.705 kb on - strand, within GFF1953 at 646.711 kb on + strand, within GFF1953
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 644,429 + +0.6 644,437 + -0.4 644,451 + -0.2 644,451 + +0.2 644,616 + +1.2 644,616 + -0.0 644,616 + -0.6 644,617 - -0.8 644,617 - +0.6 644,617 - -2.5 644,617 - -0.5 644,617 - +0.6 644,617 - -1.0 644,704 - +0.2 644,708 + -0.9 644,708 + -0.0 644,709 - +0.5 644,709 - +0.8 644,709 - +0.8 644,709 - -0.1 644,709 - -1.9 644,736 - +0.2 644,759 + -1.3 644,759 + +0.0 644,760 - -0.1 644,760 - -0.3 644,760 - -0.1 644,767 + -0.6 644,767 + -0.6 644,767 + +0.0 644,767 + -0.6 644,768 - -0.3 644,768 - -0.2 644,768 - -0.9 644,768 - -1.4 644,966 - +0.8 644,989 + -0.8 644,989 + +0.8 644,990 - +0.2 645,000 + +0.9 645,000 + -0.7 645,000 + -0.6 645,000 + -0.1 645,000 + -0.1 645,000 + -0.2 645,001 - +0.2 645,001 - +0.2 645,001 - -0.5 645,001 - -0.1 645,050 + +0.6 645,050 + -0.0 645,050 + -0.8 645,121 - GFF1949 0.62 +0.8 645,188 + -0.6 645,196 - -0.4 645,203 + -1.4 645,451 + +0.8 645,451 + -0.4 645,451 + -0.2 645,451 + +0.8 645,451 + -1.2 645,451 + -0.0 645,451 + -0.9 645,451 + -0.1 645,452 - -1.0 645,452 - -0.2 645,452 - -0.9 645,452 - +0.2 645,452 - -0.3 645,570 - GFF1951 0.43 -0.7 645,570 - GFF1951 0.43 -1.0 645,768 - -0.1 645,768 - -0.6 645,896 + GFF1952 0.11 -0.7 645,896 + GFF1952 0.11 -0.7 645,896 + GFF1952 0.11 -0.8 645,993 + GFF1952 0.25 -0.1 645,993 + GFF1952 0.25 -0.1 645,993 + GFF1952 0.25 +2.8 645,994 - GFF1952 0.25 -0.2 645,994 - GFF1952 0.25 -0.4 646,010 - GFF1952 0.27 -1.7 646,016 + GFF1952 0.28 -1.5 646,115 + GFF1952 0.42 -0.4 646,249 - GFF1952 0.61 -0.2 646,249 - GFF1952 0.61 -0.6 646,414 + GFF1952 0.84 -0.0 646,414 + GFF1952 0.84 -0.0 646,414 + GFF1952 0.84 -0.4 646,415 - GFF1952 0.84 +0.4 646,415 - GFF1952 0.84 -0.8 646,415 - GFF1952 0.84 -0.9 646,415 - GFF1952 0.84 -0.0 646,415 - GFF1952 0.84 -0.4 646,520 + +0.8 646,520 + +0.3 646,536 + -0.3 646,536 + -0.6 646,536 + -0.1 646,536 + +0.0 646,536 + +0.3 646,536 + -0.4 646,537 - -0.5 646,568 + -0.3 646,622 + GFF1953 0.15 -1.3 646,622 + GFF1953 0.15 +0.7 646,622 + GFF1953 0.15 +0.8 646,628 + GFF1953 0.16 -0.6 646,628 + GFF1953 0.16 -0.7 646,629 - GFF1953 0.16 -0.2 646,705 - GFF1953 0.28 -0.4 646,705 - GFF1953 0.28 +0.8 646,711 + GFF1953 0.29 +0.7
Or see this region's nucleotide sequence