Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1947 and GFF1948 are separated by 178 nucleotides GFF1948 and GFF1949 are separated by 960 nucleotides
GFF1947 - no description, at 642,798 to 643,439
GFF1947
GFF1948 - Phage integrase, at 643,618 to 644,088
GFF1948
GFF1949 - no description, at 645,049 to 645,165
GFF1949
Position (kb) 643
644
645 Strain fitness (log2 ratio) -2
-1
0
1 at 642.626 kb on + strand at 642.627 kb on - strand at 642.797 kb on + strand at 642.798 kb on - strand at 642.908 kb on - strand, within GFF1947 at 643.042 kb on + strand, within GFF1947 at 643.042 kb on + strand, within GFF1947 at 643.042 kb on + strand, within GFF1947 at 643.426 kb on + strand at 643.426 kb on + strand at 643.427 kb on - strand at 643.427 kb on - strand at 643.430 kb on - strand at 643.430 kb on - strand at 643.430 kb on - strand at 643.651 kb on + strand at 643.652 kb on - strand at 643.861 kb on + strand, within GFF1948 at 643.862 kb on - strand, within GFF1948 at 643.862 kb on - strand, within GFF1948 at 643.947 kb on + strand, within GFF1948 at 643.948 kb on - strand, within GFF1948 at 644.065 kb on + strand at 644.065 kb on + strand at 644.066 kb on - strand at 644.066 kb on - strand at 644.066 kb on - strand at 644.066 kb on - strand at 644.086 kb on + strand at 644.086 kb on + strand at 644.086 kb on + strand at 644.086 kb on + strand at 644.086 kb on + strand at 644.087 kb on - strand at 644.087 kb on - strand at 644.271 kb on + strand at 644.271 kb on + strand at 644.272 kb on - strand at 644.274 kb on + strand at 644.274 kb on + strand at 644.274 kb on + strand at 644.274 kb on + strand at 644.365 kb on - strand at 644.407 kb on - strand at 644.407 kb on - strand at 644.407 kb on - strand at 644.429 kb on + strand at 644.437 kb on + strand at 644.451 kb on + strand at 644.451 kb on + strand at 644.616 kb on + strand at 644.616 kb on + strand at 644.616 kb on + strand at 644.617 kb on - strand at 644.617 kb on - strand at 644.617 kb on - strand at 644.617 kb on - strand at 644.617 kb on - strand at 644.617 kb on - strand at 644.704 kb on - strand at 644.708 kb on + strand at 644.708 kb on + strand at 644.709 kb on - strand at 644.709 kb on - strand at 644.709 kb on - strand at 644.709 kb on - strand at 644.709 kb on - strand at 644.736 kb on - strand at 644.759 kb on + strand at 644.759 kb on + strand at 644.760 kb on - strand at 644.760 kb on - strand at 644.760 kb on - strand at 644.767 kb on + strand at 644.767 kb on + strand at 644.767 kb on + strand at 644.767 kb on + strand at 644.768 kb on - strand at 644.768 kb on - strand at 644.768 kb on - strand at 644.768 kb on - strand at 644.966 kb on - strand at 644.989 kb on + strand at 644.989 kb on + strand at 644.990 kb on - strand at 645.000 kb on + strand at 645.000 kb on + strand at 645.000 kb on + strand at 645.000 kb on + strand at 645.000 kb on + strand at 645.000 kb on + strand at 645.001 kb on - strand at 645.001 kb on - strand at 645.001 kb on - strand at 645.001 kb on - strand at 645.050 kb on + strand at 645.050 kb on + strand at 645.050 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 642,626 + -2.1 642,627 - -0.7 642,797 + +0.8 642,798 - -1.0 642,908 - GFF1947 0.17 -0.6 643,042 + GFF1947 0.38 +0.3 643,042 + GFF1947 0.38 -0.3 643,042 + GFF1947 0.38 +0.0 643,426 + -0.4 643,426 + -0.5 643,427 - -1.6 643,427 - -0.3 643,430 - +0.6 643,430 - -0.5 643,430 - +0.3 643,651 + -0.2 643,652 - +0.4 643,861 + GFF1948 0.52 -2.0 643,862 - GFF1948 0.52 -0.9 643,862 - GFF1948 0.52 -1.3 643,947 + GFF1948 0.70 +0.4 643,948 - GFF1948 0.70 -0.6 644,065 + -0.3 644,065 + +0.4 644,066 - +0.1 644,066 - +0.8 644,066 - -0.7 644,066 - +0.5 644,086 + +1.0 644,086 + -0.4 644,086 + -0.6 644,086 + -0.3 644,086 + +1.0 644,087 - +0.3 644,087 - -0.2 644,271 + -0.6 644,271 + -0.4 644,272 - +0.0 644,274 + -0.1 644,274 + +0.4 644,274 + -0.1 644,274 + +0.2 644,365 - +0.8 644,407 - -0.4 644,407 - +0.7 644,407 - -1.2 644,429 + +0.6 644,437 + -0.4 644,451 + -0.2 644,451 + +0.2 644,616 + +1.2 644,616 + -0.0 644,616 + -0.6 644,617 - -0.8 644,617 - +0.6 644,617 - -2.5 644,617 - -0.5 644,617 - +0.6 644,617 - -1.0 644,704 - +0.2 644,708 + -0.9 644,708 + -0.0 644,709 - +0.5 644,709 - +0.8 644,709 - +0.8 644,709 - -0.1 644,709 - -1.9 644,736 - +0.2 644,759 + -1.3 644,759 + +0.0 644,760 - -0.1 644,760 - -0.3 644,760 - -0.1 644,767 + -0.6 644,767 + -0.6 644,767 + +0.0 644,767 + -0.6 644,768 - -0.3 644,768 - -0.2 644,768 - -0.9 644,768 - -1.4 644,966 - +0.8 644,989 + -0.8 644,989 + +0.8 644,990 - +0.2 645,000 + +0.9 645,000 + -0.7 645,000 + -0.6 645,000 + -0.1 645,000 + -0.1 645,000 + -0.2 645,001 - +0.2 645,001 - +0.2 645,001 - -0.5 645,001 - -0.1 645,050 + +0.6 645,050 + -0.0 645,050 + -0.8
Or see this region's nucleotide sequence