Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1924 and GFF1925 are separated by 60 nucleotides GFF1925 and GFF1926 overlap by 4 nucleotides GFF1926 and GFF1927 overlap by 4 nucleotides
GFF1924 - Aliphatic sulfonate monooxygenase family, FMNH2- or F420-dependent, at 604,448 to 605,569
GFF1924
GFF1925 - Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases, at 605,630 to 606,454
GFF1925
GFF1926 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 606,451 to 607,458
GFF1926
GFF1927 - Alkanesulfonates-binding protein, at 607,455 to 608,435
GFF1927
Position (kb) 606
607
608 Strain fitness (log2 ratio) -1
0
1
2 at 605.496 kb on - strand at 605.619 kb on + strand at 605.619 kb on + strand at 605.619 kb on + strand at 605.619 kb on + strand at 605.619 kb on + strand at 605.619 kb on + strand at 605.619 kb on + strand at 605.620 kb on - strand at 605.620 kb on - strand at 605.620 kb on - strand at 605.620 kb on - strand at 605.702 kb on + strand at 605.702 kb on + strand at 605.703 kb on - strand at 606.044 kb on + strand, within GFF1925 at 606.045 kb on - strand, within GFF1925 at 606.269 kb on + strand, within GFF1925 at 606.269 kb on + strand, within GFF1925 at 606.270 kb on - strand, within GFF1925 at 606.673 kb on + strand, within GFF1926 at 606.674 kb on - strand, within GFF1926 at 606.674 kb on - strand, within GFF1926 at 607.051 kb on + strand, within GFF1926 at 607.051 kb on + strand, within GFF1926 at 607.082 kb on - strand, within GFF1926 at 607.114 kb on + strand, within GFF1926 at 607.114 kb on + strand, within GFF1926 at 607.114 kb on + strand, within GFF1926 at 607.115 kb on - strand, within GFF1926 at 607.115 kb on - strand, within GFF1926 at 607.220 kb on - strand, within GFF1926 at 607.220 kb on - strand, within GFF1926 at 607.265 kb on - strand, within GFF1926 at 607.265 kb on - strand, within GFF1926 at 607.366 kb on + strand at 607.367 kb on - strand at 607.654 kb on - strand, within GFF1927 at 607.911 kb on + strand, within GFF1927 at 607.911 kb on + strand, within GFF1927 at 607.912 kb on - strand, within GFF1927 at 607.912 kb on - strand, within GFF1927 at 608.044 kb on - strand, within GFF1927 at 608.118 kb on + strand, within GFF1927 at 608.119 kb on - strand, within GFF1927 at 608.119 kb on - strand, within GFF1927
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 605,496 - -0.7 605,619 + -0.1 605,619 + -0.2 605,619 + -1.0 605,619 + -0.1 605,619 + -0.5 605,619 + +0.4 605,619 + -0.6 605,620 - +0.8 605,620 - -0.1 605,620 - -0.3 605,620 - +0.2 605,702 + +0.2 605,702 + -0.6 605,703 - +0.8 606,044 + GFF1925 0.50 +0.8 606,045 - GFF1925 0.50 +1.3 606,269 + GFF1925 0.77 -0.5 606,269 + GFF1925 0.77 -1.1 606,270 - GFF1925 0.78 +0.2 606,673 + GFF1926 0.22 -0.6 606,674 - GFF1926 0.22 +0.2 606,674 - GFF1926 0.22 +0.8 607,051 + GFF1926 0.60 +0.8 607,051 + GFF1926 0.60 -0.6 607,082 - GFF1926 0.63 +0.6 607,114 + GFF1926 0.66 +0.2 607,114 + GFF1926 0.66 -0.4 607,114 + GFF1926 0.66 +0.8 607,115 - GFF1926 0.66 +0.8 607,115 - GFF1926 0.66 +0.6 607,220 - GFF1926 0.76 +1.0 607,220 - GFF1926 0.76 -0.0 607,265 - GFF1926 0.81 +0.6 607,265 - GFF1926 0.81 -0.0 607,366 + -0.7 607,367 - +0.1 607,654 - GFF1927 0.20 -0.6 607,911 + GFF1927 0.46 -0.6 607,911 + GFF1927 0.46 -0.1 607,912 - GFF1927 0.47 -0.0 607,912 - GFF1927 0.47 +1.8 608,044 - GFF1927 0.60 +0.2 608,118 + GFF1927 0.68 -0.3 608,119 - GFF1927 0.68 -0.5 608,119 - GFF1927 0.68 -0.0
Or see this region's nucleotide sequence