Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1911 and GFF1912 are separated by 0 nucleotides GFF1912 and GFF1913 are separated by 106 nucleotides GFF1913 and GFF1914 are separated by 78 nucleotides
GFF1911 - ABC transporter, substrate-binding protein (cluster 11, riboflavin/purine nucleoside/unknown), at 591,103 to 592,194
GFF1911
GFF1912 - Transcriptional regulator, LysR family, at 592,195 to 593,076
GFF1912
GFF1913 - Short-chain dehydrogenase, at 593,183 to 593,788
GFF1913
GFF1914 - Guanine deaminase (EC 3.5.4.3), at 593,867 to 595,153
GFF1914
Position (kb) 593
594 Strain fitness (log2 ratio) -2
-1
0
1
2 at 592.192 kb on + strand at 592.192 kb on + strand at 592.192 kb on + strand at 592.192 kb on + strand at 592.193 kb on - strand at 592.196 kb on + strand at 592.196 kb on + strand at 592.736 kb on + strand, within GFF1912 at 592.736 kb on + strand, within GFF1912 at 592.736 kb on + strand, within GFF1912 at 592.736 kb on + strand, within GFF1912 at 592.736 kb on + strand, within GFF1912 at 592.736 kb on + strand, within GFF1912 at 592.736 kb on + strand, within GFF1912 at 592.737 kb on - strand, within GFF1912 at 592.737 kb on - strand, within GFF1912 at 592.737 kb on - strand, within GFF1912 at 592.737 kb on - strand, within GFF1912 at 592.737 kb on - strand, within GFF1912 at 592.737 kb on - strand, within GFF1912 at 592.737 kb on - strand, within GFF1912 at 592.772 kb on + strand, within GFF1912 at 592.772 kb on + strand, within GFF1912 at 592.773 kb on - strand, within GFF1912 at 592.773 kb on - strand, within GFF1912 at 592.884 kb on - strand, within GFF1912 at 592.884 kb on - strand, within GFF1912 at 592.884 kb on - strand, within GFF1912 at 593.076 kb on + strand at 593.120 kb on + strand at 593.157 kb on + strand at 593.157 kb on + strand at 593.158 kb on - strand at 593.333 kb on + strand, within GFF1913 at 593.333 kb on + strand, within GFF1913 at 593.333 kb on + strand, within GFF1913 at 593.333 kb on + strand, within GFF1913 at 593.333 kb on + strand, within GFF1913 at 593.333 kb on + strand, within GFF1913 at 593.333 kb on + strand, within GFF1913 at 593.333 kb on + strand, within GFF1913 at 593.333 kb on + strand, within GFF1913 at 593.333 kb on + strand, within GFF1913 at 593.334 kb on - strand, within GFF1913 at 593.334 kb on - strand, within GFF1913 at 593.334 kb on - strand, within GFF1913 at 593.334 kb on - strand, within GFF1913 at 593.675 kb on + strand, within GFF1913 at 593.675 kb on + strand, within GFF1913 at 593.676 kb on - strand, within GFF1913 at 593.732 kb on + strand at 593.732 kb on + strand at 593.732 kb on + strand at 593.732 kb on + strand at 593.732 kb on + strand at 593.733 kb on - strand at 593.733 kb on - strand at 593.733 kb on - strand at 593.804 kb on - strand at 593.804 kb on - strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.806 kb on - strand at 593.806 kb on - strand at 593.806 kb on - strand at 593.806 kb on - strand at 593.806 kb on - strand at 593.806 kb on - strand at 593.806 kb on - strand at 593.806 kb on - strand at 593.814 kb on + strand at 593.814 kb on + strand at 593.814 kb on + strand at 593.815 kb on - strand at 593.815 kb on - strand at 593.815 kb on - strand at 593.815 kb on - strand at 593.850 kb on + strand at 593.850 kb on + strand at 594.149 kb on + strand, within GFF1914 at 594.149 kb on + strand, within GFF1914 at 594.149 kb on + strand, within GFF1914 at 594.149 kb on + strand, within GFF1914 at 594.150 kb on - strand, within GFF1914 at 594.150 kb on - strand, within GFF1914 at 594.150 kb on - strand, within GFF1914 at 594.521 kb on + strand, within GFF1914 at 594.522 kb on - strand, within GFF1914 at 594.591 kb on - strand, within GFF1914 at 594.620 kb on + strand, within GFF1914 at 594.620 kb on + strand, within GFF1914 at 594.620 kb on + strand, within GFF1914 at 594.621 kb on - strand, within GFF1914 at 594.621 kb on - strand, within GFF1914 at 594.656 kb on + strand, within GFF1914 at 594.671 kb on + strand, within GFF1914 at 594.671 kb on + strand, within GFF1914 at 594.671 kb on + strand, within GFF1914 at 594.672 kb on - strand, within GFF1914
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 592,192 + +1.2 592,192 + +0.3 592,192 + -1.6 592,192 + -0.2 592,193 - +0.1 592,196 + -0.6 592,196 + -0.0 592,736 + GFF1912 0.61 -0.8 592,736 + GFF1912 0.61 -0.1 592,736 + GFF1912 0.61 +0.0 592,736 + GFF1912 0.61 +2.4 592,736 + GFF1912 0.61 -1.0 592,736 + GFF1912 0.61 +1.6 592,736 + GFF1912 0.61 -0.8 592,737 - GFF1912 0.61 -0.4 592,737 - GFF1912 0.61 -0.9 592,737 - GFF1912 0.61 +0.4 592,737 - GFF1912 0.61 -0.0 592,737 - GFF1912 0.61 -0.5 592,737 - GFF1912 0.61 -0.4 592,737 - GFF1912 0.61 +0.6 592,772 + GFF1912 0.65 -0.2 592,772 + GFF1912 0.65 -0.6 592,773 - GFF1912 0.66 -0.1 592,773 - GFF1912 0.66 -0.5 592,884 - GFF1912 0.78 +0.2 592,884 - GFF1912 0.78 +0.7 592,884 - GFF1912 0.78 -1.0 593,076 + -0.8 593,120 + -0.2 593,157 + +1.2 593,157 + -1.9 593,158 - +0.7 593,333 + GFF1913 0.25 +0.3 593,333 + GFF1913 0.25 +0.6 593,333 + GFF1913 0.25 -0.7 593,333 + GFF1913 0.25 +0.2 593,333 + GFF1913 0.25 +0.2 593,333 + GFF1913 0.25 -0.5 593,333 + GFF1913 0.25 +0.8 593,333 + GFF1913 0.25 -0.0 593,333 + GFF1913 0.25 -1.8 593,333 + GFF1913 0.25 +0.0 593,334 - GFF1913 0.25 -0.4 593,334 - GFF1913 0.25 +0.8 593,334 - GFF1913 0.25 +0.7 593,334 - GFF1913 0.25 -1.0 593,675 + GFF1913 0.81 +1.5 593,675 + GFF1913 0.81 -0.9 593,676 - GFF1913 0.81 +0.0 593,732 + +0.7 593,732 + -0.7 593,732 + -0.2 593,732 + -0.8 593,732 + -0.6 593,733 - +0.2 593,733 - -0.8 593,733 - +0.2 593,804 - -0.5 593,804 - +0.2 593,805 + +0.8 593,805 + -0.3 593,805 + +0.0 593,805 + +1.0 593,805 + -0.7 593,805 + +0.8 593,805 + +0.1 593,805 + -0.8 593,805 + -0.6 593,805 + +0.1 593,805 + -0.5 593,806 - -1.4 593,806 - -2.2 593,806 - +0.5 593,806 - +0.1 593,806 - -0.2 593,806 - -1.4 593,806 - +0.6 593,806 - +0.8 593,814 + -0.4 593,814 + -0.1 593,814 + -1.6 593,815 - -0.6 593,815 - +0.6 593,815 - -0.5 593,815 - -0.7 593,850 + -0.1 593,850 + -0.2 594,149 + GFF1914 0.22 -0.3 594,149 + GFF1914 0.22 +0.2 594,149 + GFF1914 0.22 +0.1 594,149 + GFF1914 0.22 -0.6 594,150 - GFF1914 0.22 +0.2 594,150 - GFF1914 0.22 -0.2 594,150 - GFF1914 0.22 +0.6 594,521 + GFF1914 0.51 +0.2 594,522 - GFF1914 0.51 +0.4 594,591 - GFF1914 0.56 +0.2 594,620 + GFF1914 0.59 +0.7 594,620 + GFF1914 0.59 -0.4 594,620 + GFF1914 0.59 -0.1 594,621 - GFF1914 0.59 -0.8 594,621 - GFF1914 0.59 -0.3 594,656 + GFF1914 0.61 +0.5 594,671 + GFF1914 0.62 +0.6 594,671 + GFF1914 0.62 +0.1 594,671 + GFF1914 0.62 +1.0 594,672 - GFF1914 0.63 +0.8
Or see this region's nucleotide sequence