Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1631 and GFF1632 are separated by 136 nucleotides GFF1632 and GFF1633 are separated by 8 nucleotides GFF1633 and GFF1634 are separated by 126 nucleotides
GFF1631 - L-lysine 6-monooxygenase (Lysine N(6)-hydroxylase) protein, at 232,610 to 233,926
GFF1631
GFF1632 - RNA polymerase ECF-type sigma factor, at 234,063 to 234,695
GFF1632
GFF1633 - Probable transmembrane sensor, at 234,704 to 235,771
GFF1633
GFF1634 - Ferrichrome-iron receptor, at 235,898 to 238,288
GFF1634
Position (kb) 234
235
236 Strain fitness (log2 ratio) -2
-1
0
1 at 234.088 kb on + strand at 234.088 kb on + strand at 234.097 kb on - strand at 234.507 kb on + strand, within GFF1632 at 234.508 kb on - strand, within GFF1632 at 234.668 kb on + strand at 235.050 kb on - strand, within GFF1633 at 235.050 kb on - strand, within GFF1633 at 235.079 kb on + strand, within GFF1633 at 235.079 kb on + strand, within GFF1633 at 235.079 kb on + strand, within GFF1633 at 235.079 kb on + strand, within GFF1633 at 235.452 kb on + strand, within GFF1633 at 235.452 kb on + strand, within GFF1633 at 235.452 kb on + strand, within GFF1633 at 235.453 kb on - strand, within GFF1633 at 235.453 kb on - strand, within GFF1633 at 235.453 kb on - strand, within GFF1633 at 235.583 kb on + strand, within GFF1633 at 235.583 kb on + strand, within GFF1633 at 235.806 kb on + strand at 235.806 kb on + strand at 235.806 kb on + strand at 236.018 kb on - strand at 236.018 kb on - strand at 236.018 kb on - strand at 236.018 kb on - strand at 236.346 kb on - strand, within GFF1634 at 236.346 kb on - strand, within GFF1634 at 236.411 kb on + strand, within GFF1634 at 236.474 kb on + strand, within GFF1634 at 236.475 kb on - strand, within GFF1634 at 236.475 kb on - strand, within GFF1634 at 236.475 kb on - strand, within GFF1634 at 236.475 kb on - strand, within GFF1634 at 236.498 kb on - strand, within GFF1634 at 236.498 kb on - strand, within GFF1634 at 236.591 kb on + strand, within GFF1634 at 236.591 kb on + strand, within GFF1634 at 236.591 kb on + strand, within GFF1634 at 236.592 kb on - strand, within GFF1634 at 236.592 kb on - strand, within GFF1634 at 236.660 kb on + strand, within GFF1634 at 236.660 kb on + strand, within GFF1634 at 236.693 kb on + strand, within GFF1634 at 236.693 kb on + strand, within GFF1634 at 236.693 kb on + strand, within GFF1634 at 236.694 kb on - strand, within GFF1634 at 236.694 kb on - strand, within GFF1634 at 236.694 kb on - strand, within GFF1634 at 236.700 kb on - strand, within GFF1634 at 236.700 kb on - strand, within GFF1634 at 236.700 kb on - strand, within GFF1634 at 236.700 kb on - strand, within GFF1634 at 236.700 kb on - strand, within GFF1634 at 236.700 kb on - strand, within GFF1634 at 236.747 kb on + strand, within GFF1634 at 236.747 kb on + strand, within GFF1634 at 236.747 kb on + strand, within GFF1634 at 236.748 kb on - strand, within GFF1634 at 236.765 kb on + strand, within GFF1634 at 236.766 kb on - strand, within GFF1634 at 236.766 kb on - strand, within GFF1634 at 236.766 kb on - strand, within GFF1634
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 234,088 + +0.2 234,088 + -1.2 234,097 - -1.4 234,507 + GFF1632 0.70 -0.6 234,508 - GFF1632 0.70 +0.2 234,668 + -0.4 235,050 - GFF1633 0.32 -0.6 235,050 - GFF1633 0.32 +0.9 235,079 + GFF1633 0.35 +0.2 235,079 + GFF1633 0.35 -0.2 235,079 + GFF1633 0.35 +1.7 235,079 + GFF1633 0.35 -0.7 235,452 + GFF1633 0.70 -0.6 235,452 + GFF1633 0.70 -0.3 235,452 + GFF1633 0.70 -0.7 235,453 - GFF1633 0.70 +0.7 235,453 - GFF1633 0.70 -1.1 235,453 - GFF1633 0.70 +0.0 235,583 + GFF1633 0.82 -2.1 235,583 + GFF1633 0.82 -0.1 235,806 + -0.3 235,806 + +0.0 235,806 + -0.6 236,018 - -1.1 236,018 - -0.1 236,018 - -0.2 236,018 - -0.4 236,346 - GFF1634 0.19 -0.8 236,346 - GFF1634 0.19 -0.3 236,411 + GFF1634 0.21 -0.3 236,474 + GFF1634 0.24 -0.4 236,475 - GFF1634 0.24 -0.3 236,475 - GFF1634 0.24 +0.2 236,475 - GFF1634 0.24 -1.1 236,475 - GFF1634 0.24 -0.1 236,498 - GFF1634 0.25 +1.0 236,498 - GFF1634 0.25 -0.8 236,591 + GFF1634 0.29 +1.4 236,591 + GFF1634 0.29 +0.7 236,591 + GFF1634 0.29 -0.8 236,592 - GFF1634 0.29 +0.2 236,592 - GFF1634 0.29 -1.5 236,660 + GFF1634 0.32 -1.3 236,660 + GFF1634 0.32 -0.9 236,693 + GFF1634 0.33 +1.2 236,693 + GFF1634 0.33 +1.7 236,693 + GFF1634 0.33 +0.4 236,694 - GFF1634 0.33 +0.0 236,694 - GFF1634 0.33 -0.3 236,694 - GFF1634 0.33 -1.2 236,700 - GFF1634 0.34 +0.7 236,700 - GFF1634 0.34 -0.5 236,700 - GFF1634 0.34 +0.1 236,700 - GFF1634 0.34 -0.5 236,700 - GFF1634 0.34 -0.6 236,700 - GFF1634 0.34 -0.1 236,747 + GFF1634 0.36 -0.3 236,747 + GFF1634 0.36 +0.7 236,747 + GFF1634 0.36 +0.0 236,748 - GFF1634 0.36 +1.3 236,765 + GFF1634 0.36 +0.2 236,766 - GFF1634 0.36 +0.1 236,766 - GFF1634 0.36 +0.0 236,766 - GFF1634 0.36 +0.4
Or see this region's nucleotide sequence