Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1534 and GFF1535 are separated by 115 nucleotides GFF1535 and GFF1536 overlap by 4 nucleotides GFF1536 and GFF1537 are separated by 10 nucleotides
GFF1534 - Transcriptional regulator, LysR family, at 131,994 to 132,896
GFF1534
GFF1535 - Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25), at 133,012 to 133,917
GFF1535
GFF1536 - BUG/TctC family periplasmic protein, at 133,914 to 134,897
GFF1536
GFF1537 - FIG01127817: hypothetical protein, at 134,908 to 136,569
GFF1537
Position (kb) 133
134 Strain fitness (log2 ratio) -2
-1
0
1
2 at 132.097 kb on + strand, within GFF1534 at 132.097 kb on + strand, within GFF1534 at 132.097 kb on + strand, within GFF1534 at 132.224 kb on - strand, within GFF1534 at 132.316 kb on + strand, within GFF1534 at 132.316 kb on + strand, within GFF1534 at 132.317 kb on - strand, within GFF1534 at 132.682 kb on + strand, within GFF1534 at 132.682 kb on + strand, within GFF1534 at 132.710 kb on + strand, within GFF1534 at 132.710 kb on + strand, within GFF1534 at 132.710 kb on + strand, within GFF1534 at 132.711 kb on - strand, within GFF1534 at 132.711 kb on - strand, within GFF1534 at 132.711 kb on - strand, within GFF1534 at 132.711 kb on - strand, within GFF1534 at 132.908 kb on - strand at 132.972 kb on + strand at 132.998 kb on + strand at 132.998 kb on + strand at 132.999 kb on - strand at 132.999 kb on - strand at 132.999 kb on - strand at 132.999 kb on - strand at 132.999 kb on - strand at 133.264 kb on + strand, within GFF1535 at 133.265 kb on - strand, within GFF1535 at 133.265 kb on - strand, within GFF1535 at 133.823 kb on - strand, within GFF1535 at 134.001 kb on + strand at 134.233 kb on - strand, within GFF1536 at 134.248 kb on - strand, within GFF1536 at 134.385 kb on + strand, within GFF1536 at 134.385 kb on + strand, within GFF1536 at 134.385 kb on + strand, within GFF1536 at 134.385 kb on + strand, within GFF1536 at 134.386 kb on - strand, within GFF1536 at 134.475 kb on + strand, within GFF1536 at 134.476 kb on - strand, within GFF1536 at 134.476 kb on - strand, within GFF1536 at 134.857 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 132,097 + GFF1534 0.11 -0.8 132,097 + GFF1534 0.11 -0.9 132,097 + GFF1534 0.11 -0.9 132,224 - GFF1534 0.25 -0.1 132,316 + GFF1534 0.36 -1.8 132,316 + GFF1534 0.36 -1.0 132,317 - GFF1534 0.36 -0.8 132,682 + GFF1534 0.76 -0.6 132,682 + GFF1534 0.76 +0.9 132,710 + GFF1534 0.79 -0.5 132,710 + GFF1534 0.79 -0.2 132,710 + GFF1534 0.79 -0.5 132,711 - GFF1534 0.79 +0.4 132,711 - GFF1534 0.79 -0.6 132,711 - GFF1534 0.79 -0.5 132,711 - GFF1534 0.79 -0.2 132,908 - +0.1 132,972 + +2.0 132,998 + -0.2 132,998 + +0.2 132,999 - -0.5 132,999 - +0.4 132,999 - -0.2 132,999 - -0.7 132,999 - +0.2 133,264 + GFF1535 0.28 -0.6 133,265 - GFF1535 0.28 +0.0 133,265 - GFF1535 0.28 -0.6 133,823 - GFF1535 0.90 -1.5 134,001 + +1.0 134,233 - GFF1536 0.32 +1.4 134,248 - GFF1536 0.34 -1.1 134,385 + GFF1536 0.48 -0.7 134,385 + GFF1536 0.48 -0.2 134,385 + GFF1536 0.48 -1.0 134,385 + GFF1536 0.48 -0.0 134,386 - GFF1536 0.48 +0.1 134,475 + GFF1536 0.57 +0.9 134,476 - GFF1536 0.57 +0.0 134,476 - GFF1536 0.57 -1.5 134,857 - +0.3
Or see this region's nucleotide sequence