Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1450 and GFF1451 are separated by 5 nucleotides GFF1451 and GFF1452 are separated by 43 nucleotides
GFF1450 - similar to ribulose-1,5-bisphosphate carboxylase, Type III, at 42,046 to 43,314
GFF1450
GFF1451 - FIG00456379: hypothetical protein, at 43,320 to 43,859
GFF1451
GFF1452 - Predicted gluconate TRAP family transporter, DctM subunit, at 43,903 to 45,792
GFF1452
Position (kb) 43
44 Strain fitness (log2 ratio) -2
-1
0
1 at 43.286 kb on + strand at 43.457 kb on - strand, within GFF1451 at 43.556 kb on - strand, within GFF1451 at 43.571 kb on - strand, within GFF1451 at 43.667 kb on - strand, within GFF1451 at 43.753 kb on + strand, within GFF1451 at 43.754 kb on - strand, within GFF1451 at 43.754 kb on - strand, within GFF1451 at 43.754 kb on - strand, within GFF1451 at 43.789 kb on + strand, within GFF1451 at 43.789 kb on + strand, within GFF1451 at 43.822 kb on + strand at 43.823 kb on - strand at 43.823 kb on - strand at 43.823 kb on - strand at 43.823 kb on - strand at 43.823 kb on - strand at 43.980 kb on - strand at 44.042 kb on + strand at 44.042 kb on + strand at 44.043 kb on - strand at 44.106 kb on - strand, within GFF1452 at 44.237 kb on + strand, within GFF1452 at 44.237 kb on + strand, within GFF1452 at 44.238 kb on - strand, within GFF1452 at 44.238 kb on - strand, within GFF1452 at 44.564 kb on + strand, within GFF1452 at 44.565 kb on - strand, within GFF1452 at 44.565 kb on - strand, within GFF1452
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 43,286 + -0.3 43,457 - GFF1451 0.25 -2.1 43,556 - GFF1451 0.44 -2.0 43,571 - GFF1451 0.46 +1.4 43,667 - GFF1451 0.64 -0.1 43,753 + GFF1451 0.80 -1.1 43,754 - GFF1451 0.80 +0.5 43,754 - GFF1451 0.80 -0.5 43,754 - GFF1451 0.80 +0.9 43,789 + GFF1451 0.87 -1.6 43,789 + GFF1451 0.87 -0.7 43,822 + -0.3 43,823 - -0.1 43,823 - +1.0 43,823 - -0.6 43,823 - -0.0 43,823 - +0.7 43,980 - -0.0 44,042 + +1.0 44,042 + -0.6 44,043 - -0.0 44,106 - GFF1452 0.11 -0.6 44,237 + GFF1452 0.18 -0.5 44,237 + GFF1452 0.18 +0.4 44,238 - GFF1452 0.18 -1.1 44,238 - GFF1452 0.18 -0.4 44,564 + GFF1452 0.35 +0.6 44,565 - GFF1452 0.35 +0.0 44,565 - GFF1452 0.35 -0.9
Or see this region's nucleotide sequence