Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1448 and GFF1449 are separated by 12 nucleotides GFF1449 and GFF1450 overlap by 4 nucleotides
GFF1448 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 37,544 to 40,723
GFF1448
GFF1449 - Predicted pyridoxine biosynthesis protein (probably from glycolaldehide), at 40,736 to 42,049
GFF1449
GFF1450 - similar to ribulose-1,5-bisphosphate carboxylase, Type III, at 42,046 to 43,314
GFF1450
Position (kb) 40
41
42
43 Strain fitness (log2 ratio) -1
0
1 at 39.863 kb on + strand, within GFF1448 at 39.864 kb on - strand, within GFF1448 at 39.864 kb on - strand, within GFF1448 at 39.864 kb on - strand, within GFF1448 at 40.437 kb on - strand at 40.549 kb on + strand at 40.640 kb on + strand at 40.640 kb on + strand at 40.722 kb on - strand at 40.722 kb on - strand at 40.879 kb on - strand, within GFF1449 at 41.219 kb on + strand, within GFF1449 at 41.220 kb on - strand, within GFF1449 at 41.662 kb on - strand, within GFF1449 at 41.790 kb on + strand, within GFF1449 at 41.790 kb on + strand, within GFF1449 at 41.790 kb on + strand, within GFF1449 at 41.791 kb on - strand, within GFF1449 at 41.791 kb on - strand, within GFF1449 at 42.024 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 39,863 + GFF1448 0.73 -1.1 39,864 - GFF1448 0.73 -0.4 39,864 - GFF1448 0.73 +1.1 39,864 - GFF1448 0.73 +0.8 40,437 - +1.5 40,549 + -0.5 40,640 + +1.7 40,640 + -1.0 40,722 - -0.3 40,722 - +0.7 40,879 - GFF1449 0.11 -0.7 41,219 + GFF1449 0.37 +1.2 41,220 - GFF1449 0.37 +1.0 41,662 - GFF1449 0.70 -1.1 41,790 + GFF1449 0.80 +1.3 41,790 + GFF1449 0.80 +0.3 41,790 + GFF1449 0.80 +1.1 41,791 - GFF1449 0.80 +0.0 41,791 - GFF1449 0.80 -0.5 42,024 + +0.7
Or see this region's nucleotide sequence