Strain Fitness in Variovorax sp. SCN45 around GFF1281

Experiment: Community=Kojac gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1279 and GFF1280 are separated by 13 nucleotidesGFF1280 and GFF1281 overlap by 10 nucleotidesGFF1281 and GFF1282 are separated by 45 nucleotidesGFF1282 and GFF1283 are separated by 68 nucleotides GFF1279 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 608,302 to 609,135 GFF1279 GFF1280 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 609,149 to 609,856 GFF1280 GFF1281 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 609,847 to 610,578 GFF1281 GFF1282 - Chromate reductase (EC 1.6.5.2), at 610,624 to 611,178 GFF1282 GFF1283 - FMN-dependent NADH-azoreductase (EC 1.7.1.6), at 611,247 to 611,894 GFF1283 Position (kb) 609 610 611Strain fitness (log2 ratio) -2 -1 0 1 2 3at 608.942 kb on + strand, within GFF1279at 608.953 kb on + strand, within GFF1279at 608.953 kb on + strand, within GFF1279at 608.953 kb on + strand, within GFF1279at 608.954 kb on - strand, within GFF1279at 609.052 kb on + strandat 609.052 kb on + strandat 609.052 kb on + strandat 609.053 kb on - strandat 609.053 kb on - strandat 609.053 kb on - strandat 609.053 kb on - strandat 609.329 kb on + strand, within GFF1280at 609.329 kb on + strand, within GFF1280at 609.329 kb on + strand, within GFF1280at 609.329 kb on + strand, within GFF1280at 609.329 kb on + strand, within GFF1280at 609.329 kb on + strand, within GFF1280at 609.330 kb on - strand, within GFF1280at 609.330 kb on - strand, within GFF1280at 609.330 kb on - strand, within GFF1280at 609.330 kb on - strand, within GFF1280at 609.330 kb on - strand, within GFF1280at 609.330 kb on - strand, within GFF1280at 609.330 kb on - strand, within GFF1280at 609.380 kb on + strand, within GFF1280at 609.380 kb on + strand, within GFF1280at 609.380 kb on + strand, within GFF1280at 609.428 kb on + strand, within GFF1280at 609.428 kb on + strand, within GFF1280at 609.428 kb on + strand, within GFF1280at 609.428 kb on + strand, within GFF1280at 609.429 kb on - strand, within GFF1280at 609.429 kb on - strand, within GFF1280at 609.429 kb on - strand, within GFF1280at 609.429 kb on - strand, within GFF1280at 609.429 kb on - strand, within GFF1280at 609.485 kb on + strand, within GFF1280at 609.497 kb on + strand, within GFF1280at 609.497 kb on + strand, within GFF1280at 609.497 kb on + strand, within GFF1280at 609.497 kb on + strand, within GFF1280at 609.497 kb on + strand, within GFF1280at 609.497 kb on + strand, within GFF1280at 609.497 kb on + strand, within GFF1280at 609.497 kb on + strand, within GFF1280at 609.498 kb on - strand, within GFF1280at 609.498 kb on - strand, within GFF1280at 609.498 kb on - strand, within GFF1280at 609.498 kb on - strand, within GFF1280at 609.498 kb on - strand, within GFF1280at 609.650 kb on + strand, within GFF1280at 609.650 kb on + strand, within GFF1280at 609.650 kb on + strand, within GFF1280at 609.650 kb on + strand, within GFF1280at 609.650 kb on + strand, within GFF1280at 609.650 kb on + strand, within GFF1280at 609.650 kb on + strand, within GFF1280at 609.650 kb on + strand, within GFF1280at 609.651 kb on - strand, within GFF1280at 609.651 kb on - strand, within GFF1280at 609.651 kb on - strand, within GFF1280at 609.651 kb on - strand, within GFF1280at 609.651 kb on - strand, within GFF1280at 609.651 kb on - strand, within GFF1280at 609.651 kb on - strand, within GFF1280at 609.710 kb on + strand, within GFF1280at 609.711 kb on - strand, within GFF1280at 609.779 kb on + strand, within GFF1280at 609.779 kb on + strand, within GFF1280at 609.779 kb on + strand, within GFF1280at 609.780 kb on - strand, within GFF1280at 609.780 kb on - strand, within GFF1280at 609.780 kb on - strand, within GFF1280at 609.780 kb on - strand, within GFF1280at 609.884 kb on - strandat 609.884 kb on - strandat 610.093 kb on + strand, within GFF1281at 610.093 kb on + strand, within GFF1281at 610.093 kb on + strand, within GFF1281at 610.093 kb on + strand, within GFF1281at 610.093 kb on + strand, within GFF1281at 610.093 kb on + strand, within GFF1281at 610.094 kb on - strand, within GFF1281at 610.094 kb on - strand, within GFF1281at 610.094 kb on - strand, within GFF1281at 610.177 kb on + strand, within GFF1281at 610.177 kb on + strand, within GFF1281at 610.363 kb on + strand, within GFF1281at 610.363 kb on + strand, within GFF1281at 610.363 kb on + strand, within GFF1281at 610.363 kb on + strand, within GFF1281at 610.363 kb on + strand, within GFF1281at 610.363 kb on + strand, within GFF1281at 610.363 kb on + strand, within GFF1281at 610.363 kb on + strand, within GFF1281at 610.364 kb on - strand, within GFF1281at 610.364 kb on - strand, within GFF1281at 610.364 kb on - strand, within GFF1281at 610.364 kb on - strand, within GFF1281at 610.364 kb on - strand, within GFF1281at 610.365 kb on + strand, within GFF1281at 610.365 kb on + strand, within GFF1281at 610.366 kb on - strand, within GFF1281at 610.366 kb on - strand, within GFF1281at 610.366 kb on - strand, within GFF1281at 610.426 kb on + strand, within GFF1281at 610.463 kb on - strand, within GFF1281at 610.463 kb on - strand, within GFF1281at 610.463 kb on - strand, within GFF1281at 610.463 kb on - strand, within GFF1281at 610.463 kb on - strand, within GFF1281at 610.675 kb on + strandat 610.675 kb on + strandat 610.675 kb on + strandat 610.675 kb on + strandat 610.675 kb on + strandat 610.676 kb on - strandat 610.676 kb on - strandat 610.676 kb on - strandat 610.762 kb on + strand, within GFF1282at 610.762 kb on + strand, within GFF1282at 610.763 kb on - strand, within GFF1282at 610.763 kb on - strand, within GFF1282at 610.763 kb on - strand, within GFF1282at 610.858 kb on + strand, within GFF1282at 610.858 kb on + strand, within GFF1282at 610.858 kb on + strand, within GFF1282at 610.859 kb on - strand, within GFF1282at 610.859 kb on - strand, within GFF1282at 610.859 kb on - strand, within GFF1282at 611.020 kb on + strand, within GFF1282at 611.020 kb on + strand, within GFF1282at 611.021 kb on - strand, within GFF1282at 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.147 kb on - strandat 611.147 kb on - strandat 611.147 kb on - strandat 611.147 kb on - strandat 611.147 kb on - strandat 611.147 kb on - strandat 611.419 kb on + strand, within GFF1283at 611.419 kb on + strand, within GFF1283at 611.419 kb on + strand, within GFF1283at 611.419 kb on + strand, within GFF1283at 611.419 kb on + strand, within GFF1283at 611.419 kb on + strand, within GFF1283at 611.419 kb on + strand, within GFF1283at 611.419 kb on + strand, within GFF1283at 611.419 kb on + strand, within GFF1283at 611.420 kb on - strand, within GFF1283at 611.420 kb on - strand, within GFF1283at 611.420 kb on - strand, within GFF1283at 611.420 kb on - strand, within GFF1283at 611.420 kb on - strand, within GFF1283at 611.420 kb on - strand, within GFF1283at 611.464 kb on + strand, within GFF1283at 611.465 kb on - strand, within GFF1283at 611.465 kb on - strand, within GFF1283at 611.465 kb on - strand, within GFF1283at 611.536 kb on + strand, within GFF1283at 611.537 kb on - strand, within GFF1283at 611.537 kb on - strand, within GFF1283

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1
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608,942 + GFF1279 0.77 -0.2
608,953 + GFF1279 0.78 +0.4
608,953 + GFF1279 0.78 +0.1
608,953 + GFF1279 0.78 +0.3
608,954 - GFF1279 0.78 +1.1
609,052 + +0.1
609,052 + -0.2
609,052 + -0.1
609,053 - -0.8
609,053 - +0.0
609,053 - -1.0
609,053 - -0.7
609,329 + GFF1280 0.25 +0.0
609,329 + GFF1280 0.25 -0.4
609,329 + GFF1280 0.25 +0.1
609,329 + GFF1280 0.25 -0.8
609,329 + GFF1280 0.25 +0.1
609,329 + GFF1280 0.25 -0.6
609,330 - GFF1280 0.26 -0.0
609,330 - GFF1280 0.26 -0.3
609,330 - GFF1280 0.26 +2.9
609,330 - GFF1280 0.26 -0.6
609,330 - GFF1280 0.26 -0.2
609,330 - GFF1280 0.26 -0.5
609,330 - GFF1280 0.26 -0.5
609,380 + GFF1280 0.33 +0.4
609,380 + GFF1280 0.33 +0.4
609,380 + GFF1280 0.33 -0.6
609,428 + GFF1280 0.39 +0.0
609,428 + GFF1280 0.39 -0.3
609,428 + GFF1280 0.39 +0.2
609,428 + GFF1280 0.39 -1.4
609,429 - GFF1280 0.40 +0.7
609,429 - GFF1280 0.40 -0.5
609,429 - GFF1280 0.40 -0.4
609,429 - GFF1280 0.40 -0.0
609,429 - GFF1280 0.40 -1.0
609,485 + GFF1280 0.47 -0.7
609,497 + GFF1280 0.49 -0.2
609,497 + GFF1280 0.49 -0.2
609,497 + GFF1280 0.49 -0.3
609,497 + GFF1280 0.49 -0.9
609,497 + GFF1280 0.49 -0.2
609,497 + GFF1280 0.49 -0.4
609,497 + GFF1280 0.49 -0.8
609,497 + GFF1280 0.49 -1.0
609,498 - GFF1280 0.49 +0.1
609,498 - GFF1280 0.49 -1.3
609,498 - GFF1280 0.49 +0.7
609,498 - GFF1280 0.49 -0.2
609,498 - GFF1280 0.49 +1.1
609,650 + GFF1280 0.71 -0.3
609,650 + GFF1280 0.71 -1.0
609,650 + GFF1280 0.71 -0.3
609,650 + GFF1280 0.71 -0.2
609,650 + GFF1280 0.71 +0.2
609,650 + GFF1280 0.71 +0.3
609,650 + GFF1280 0.71 +0.6
609,650 + GFF1280 0.71 +0.3
609,651 - GFF1280 0.71 +0.4
609,651 - GFF1280 0.71 +1.9
609,651 - GFF1280 0.71 -0.5
609,651 - GFF1280 0.71 +0.0
609,651 - GFF1280 0.71 -1.3
609,651 - GFF1280 0.71 -0.2
609,651 - GFF1280 0.71 -0.7
609,710 + GFF1280 0.79 -0.7
609,711 - GFF1280 0.79 +1.3
609,779 + GFF1280 0.89 -0.5
609,779 + GFF1280 0.89 +0.4
609,779 + GFF1280 0.89 -0.0
609,780 - GFF1280 0.89 -1.0
609,780 - GFF1280 0.89 -0.1
609,780 - GFF1280 0.89 -0.0
609,780 - GFF1280 0.89 -0.1
609,884 - -0.0
609,884 - -0.6
610,093 + GFF1281 0.34 -0.2
610,093 + GFF1281 0.34 -0.0
610,093 + GFF1281 0.34 +0.3
610,093 + GFF1281 0.34 +1.9
610,093 + GFF1281 0.34 -0.1
610,093 + GFF1281 0.34 +0.3
610,094 - GFF1281 0.34 -0.1
610,094 - GFF1281 0.34 -0.0
610,094 - GFF1281 0.34 -0.3
610,177 + GFF1281 0.45 -0.3
610,177 + GFF1281 0.45 -0.6
610,363 + GFF1281 0.70 -0.1
610,363 + GFF1281 0.70 +1.5
610,363 + GFF1281 0.70 -1.3
610,363 + GFF1281 0.70 -0.1
610,363 + GFF1281 0.70 +0.2
610,363 + GFF1281 0.70 -0.8
610,363 + GFF1281 0.70 -0.5
610,363 + GFF1281 0.70 -0.3
610,364 - GFF1281 0.71 +0.3
610,364 - GFF1281 0.71 -0.6
610,364 - GFF1281 0.71 -0.1
610,364 - GFF1281 0.71 +0.5
610,364 - GFF1281 0.71 -0.4
610,365 + GFF1281 0.71 -1.4
610,365 + GFF1281 0.71 +3.3
610,366 - GFF1281 0.71 -0.2
610,366 - GFF1281 0.71 +0.3
610,366 - GFF1281 0.71 -1.1
610,426 + GFF1281 0.79 +0.4
610,463 - GFF1281 0.84 +0.1
610,463 - GFF1281 0.84 +0.2
610,463 - GFF1281 0.84 -1.4
610,463 - GFF1281 0.84 -1.5
610,463 - GFF1281 0.84 +0.1
610,675 + +0.7
610,675 + -0.4
610,675 + -0.2
610,675 + -0.3
610,675 + +0.3
610,676 - -1.3
610,676 - -0.1
610,676 - -0.7
610,762 + GFF1282 0.25 -0.5
610,762 + GFF1282 0.25 +0.1
610,763 - GFF1282 0.25 +0.3
610,763 - GFF1282 0.25 +1.0
610,763 - GFF1282 0.25 +1.0
610,858 + GFF1282 0.42 -0.4
610,858 + GFF1282 0.42 -1.7
610,858 + GFF1282 0.42 -0.2
610,859 - GFF1282 0.42 -0.8
610,859 - GFF1282 0.42 +0.8
610,859 - GFF1282 0.42 -1.1
611,020 + GFF1282 0.71 -0.5
611,020 + GFF1282 0.71 -0.3
611,021 - GFF1282 0.72 +0.5
611,146 + -1.5
611,146 + -1.3
611,146 + -0.9
611,146 + -1.2
611,146 + -0.7
611,146 + +0.5
611,146 + -2.0
611,146 + +0.3
611,146 + +0.3
611,146 + +0.7
611,146 + -0.0
611,146 + -1.0
611,146 + -0.1
611,146 + +0.6
611,146 + +1.0
611,146 + -0.1
611,147 - +0.4
611,147 - -0.8
611,147 - -0.2
611,147 - -0.3
611,147 - +0.5
611,147 - -2.2
611,419 + GFF1283 0.27 -1.3
611,419 + GFF1283 0.27 -0.5
611,419 + GFF1283 0.27 -0.6
611,419 + GFF1283 0.27 -0.9
611,419 + GFF1283 0.27 +0.3
611,419 + GFF1283 0.27 +0.2
611,419 + GFF1283 0.27 -0.2
611,419 + GFF1283 0.27 +0.1
611,419 + GFF1283 0.27 +1.0
611,420 - GFF1283 0.27 -1.0
611,420 - GFF1283 0.27 +0.3
611,420 - GFF1283 0.27 -0.5
611,420 - GFF1283 0.27 +0.3
611,420 - GFF1283 0.27 -0.6
611,420 - GFF1283 0.27 +0.0
611,464 + GFF1283 0.33 -0.8
611,465 - GFF1283 0.34 +0.4
611,465 - GFF1283 0.34 -1.1
611,465 - GFF1283 0.34 -1.0
611,536 + GFF1283 0.45 +1.7
611,537 - GFF1283 0.45 -0.7
611,537 - GFF1283 0.45 -0.3

Or see this region's nucleotide sequence