Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1277 and GFF1278 are separated by 52 nucleotides GFF1278 and GFF1279 overlap by 4 nucleotides GFF1279 and GFF1280 are separated by 13 nucleotides GFF1280 and GFF1281 overlap by 10 nucleotides
GFF1277 - Alkanesulfonates-binding protein, at 607,159 to 608,130
GFF1277
GFF1278 - no description, at 608,183 to 608,305
GFF1278
GFF1279 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 608,302 to 609,135
GFF1279
GFF1280 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 609,149 to 609,856
GFF1280
GFF1281 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 609,847 to 610,578
GFF1281
Position (kb) 608
609
610 Strain fitness (log2 ratio) -1
0
1
2
3 at 607.469 kb on + strand, within GFF1277 at 607.469 kb on + strand, within GFF1277 at 607.470 kb on - strand, within GFF1277 at 607.470 kb on - strand, within GFF1277 at 607.587 kb on - strand, within GFF1277 at 607.587 kb on - strand, within GFF1277 at 607.619 kb on + strand, within GFF1277 at 607.619 kb on + strand, within GFF1277 at 607.619 kb on + strand, within GFF1277 at 607.620 kb on - strand, within GFF1277 at 607.620 kb on - strand, within GFF1277 at 607.620 kb on - strand, within GFF1277 at 607.679 kb on + strand, within GFF1277 at 607.680 kb on - strand, within GFF1277 at 607.680 kb on - strand, within GFF1277 at 607.680 kb on - strand, within GFF1277 at 607.680 kb on - strand, within GFF1277 at 607.680 kb on - strand, within GFF1277 at 607.680 kb on - strand, within GFF1277 at 607.680 kb on - strand, within GFF1277 at 607.692 kb on - strand, within GFF1277 at 607.692 kb on - strand, within GFF1277 at 607.805 kb on + strand, within GFF1277 at 607.806 kb on - strand, within GFF1277 at 607.806 kb on - strand, within GFF1277 at 608.061 kb on + strand at 608.155 kb on + strand at 608.155 kb on + strand at 608.155 kb on + strand at 608.155 kb on + strand at 608.156 kb on - strand at 608.156 kb on - strand at 608.156 kb on - strand at 608.221 kb on + strand, within GFF1278 at 608.221 kb on + strand, within GFF1278 at 608.221 kb on + strand, within GFF1278 at 608.221 kb on + strand, within GFF1278 at 608.221 kb on + strand, within GFF1278 at 608.221 kb on + strand, within GFF1278 at 608.222 kb on - strand, within GFF1278 at 608.222 kb on - strand, within GFF1278 at 608.222 kb on - strand, within GFF1278 at 608.222 kb on - strand, within GFF1278 at 608.222 kb on - strand, within GFF1278 at 608.266 kb on + strand, within GFF1278 at 608.266 kb on + strand, within GFF1278 at 608.266 kb on + strand, within GFF1278 at 608.284 kb on + strand, within GFF1278 at 608.284 kb on + strand, within GFF1278 at 608.284 kb on + strand, within GFF1278 at 608.285 kb on - strand, within GFF1278 at 608.453 kb on - strand, within GFF1279 at 608.659 kb on + strand, within GFF1279 at 608.660 kb on - strand, within GFF1279 at 608.660 kb on - strand, within GFF1279 at 608.783 kb on - strand, within GFF1279 at 608.783 kb on - strand, within GFF1279 at 608.806 kb on + strand, within GFF1279 at 608.807 kb on - strand, within GFF1279 at 608.807 kb on - strand, within GFF1279 at 608.807 kb on - strand, within GFF1279 at 608.942 kb on + strand, within GFF1279 at 608.953 kb on + strand, within GFF1279 at 608.953 kb on + strand, within GFF1279 at 608.953 kb on + strand, within GFF1279 at 608.954 kb on - strand, within GFF1279 at 609.052 kb on + strand at 609.052 kb on + strand at 609.052 kb on + strand at 609.053 kb on - strand at 609.053 kb on - strand at 609.053 kb on - strand at 609.053 kb on - strand at 609.329 kb on + strand, within GFF1280 at 609.329 kb on + strand, within GFF1280 at 609.329 kb on + strand, within GFF1280 at 609.329 kb on + strand, within GFF1280 at 609.329 kb on + strand, within GFF1280 at 609.329 kb on + strand, within GFF1280 at 609.330 kb on - strand, within GFF1280 at 609.330 kb on - strand, within GFF1280 at 609.330 kb on - strand, within GFF1280 at 609.330 kb on - strand, within GFF1280 at 609.330 kb on - strand, within GFF1280 at 609.330 kb on - strand, within GFF1280 at 609.330 kb on - strand, within GFF1280 at 609.380 kb on + strand, within GFF1280 at 609.380 kb on + strand, within GFF1280 at 609.380 kb on + strand, within GFF1280 at 609.428 kb on + strand, within GFF1280 at 609.428 kb on + strand, within GFF1280 at 609.428 kb on + strand, within GFF1280 at 609.428 kb on + strand, within GFF1280 at 609.429 kb on - strand, within GFF1280 at 609.429 kb on - strand, within GFF1280 at 609.429 kb on - strand, within GFF1280 at 609.429 kb on - strand, within GFF1280 at 609.429 kb on - strand, within GFF1280 at 609.485 kb on + strand, within GFF1280 at 609.497 kb on + strand, within GFF1280 at 609.497 kb on + strand, within GFF1280 at 609.497 kb on + strand, within GFF1280 at 609.497 kb on + strand, within GFF1280 at 609.497 kb on + strand, within GFF1280 at 609.497 kb on + strand, within GFF1280 at 609.497 kb on + strand, within GFF1280 at 609.497 kb on + strand, within GFF1280 at 609.498 kb on - strand, within GFF1280 at 609.498 kb on - strand, within GFF1280 at 609.498 kb on - strand, within GFF1280 at 609.498 kb on - strand, within GFF1280 at 609.498 kb on - strand, within GFF1280 at 609.650 kb on + strand, within GFF1280 at 609.650 kb on + strand, within GFF1280 at 609.650 kb on + strand, within GFF1280 at 609.650 kb on + strand, within GFF1280 at 609.650 kb on + strand, within GFF1280 at 609.650 kb on + strand, within GFF1280 at 609.650 kb on + strand, within GFF1280 at 609.650 kb on + strand, within GFF1280 at 609.651 kb on - strand, within GFF1280 at 609.651 kb on - strand, within GFF1280 at 609.651 kb on - strand, within GFF1280 at 609.651 kb on - strand, within GFF1280 at 609.651 kb on - strand, within GFF1280 at 609.651 kb on - strand, within GFF1280 at 609.651 kb on - strand, within GFF1280 at 609.710 kb on + strand, within GFF1280 at 609.711 kb on - strand, within GFF1280 at 609.779 kb on + strand, within GFF1280 at 609.779 kb on + strand, within GFF1280 at 609.779 kb on + strand, within GFF1280 at 609.780 kb on - strand, within GFF1280 at 609.780 kb on - strand, within GFF1280 at 609.780 kb on - strand, within GFF1280 at 609.780 kb on - strand, within GFF1280 at 609.884 kb on - strand at 609.884 kb on - strand at 610.093 kb on + strand, within GFF1281 at 610.093 kb on + strand, within GFF1281 at 610.093 kb on + strand, within GFF1281 at 610.093 kb on + strand, within GFF1281 at 610.093 kb on + strand, within GFF1281 at 610.093 kb on + strand, within GFF1281 at 610.094 kb on - strand, within GFF1281 at 610.094 kb on - strand, within GFF1281 at 610.094 kb on - strand, within GFF1281
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 607,469 + GFF1277 0.32 +0.1 607,469 + GFF1277 0.32 -0.5 607,470 - GFF1277 0.32 -0.2 607,470 - GFF1277 0.32 -0.1 607,587 - GFF1277 0.44 -0.1 607,587 - GFF1277 0.44 -0.2 607,619 + GFF1277 0.47 -0.8 607,619 + GFF1277 0.47 -0.3 607,619 + GFF1277 0.47 -1.3 607,620 - GFF1277 0.47 -0.1 607,620 - GFF1277 0.47 -0.2 607,620 - GFF1277 0.47 +1.0 607,679 + GFF1277 0.53 -0.5 607,680 - GFF1277 0.54 -0.5 607,680 - GFF1277 0.54 -0.2 607,680 - GFF1277 0.54 -0.1 607,680 - GFF1277 0.54 +0.1 607,680 - GFF1277 0.54 -1.7 607,680 - GFF1277 0.54 +0.5 607,680 - GFF1277 0.54 +0.0 607,692 - GFF1277 0.55 -0.4 607,692 - GFF1277 0.55 +0.3 607,805 + GFF1277 0.66 +0.4 607,806 - GFF1277 0.67 -0.3 607,806 - GFF1277 0.67 -1.4 608,061 + -0.6 608,155 + +0.6 608,155 + +0.5 608,155 + -0.4 608,155 + +0.4 608,156 - -0.8 608,156 - -0.4 608,156 - -0.8 608,221 + GFF1278 0.31 -0.8 608,221 + GFF1278 0.31 -0.9 608,221 + GFF1278 0.31 -1.0 608,221 + GFF1278 0.31 -0.7 608,221 + GFF1278 0.31 -0.4 608,221 + GFF1278 0.31 -1.1 608,222 - GFF1278 0.32 +0.5 608,222 - GFF1278 0.32 +1.3 608,222 - GFF1278 0.32 -0.0 608,222 - GFF1278 0.32 -0.4 608,222 - GFF1278 0.32 -0.7 608,266 + GFF1278 0.67 -0.7 608,266 + GFF1278 0.67 -0.0 608,266 + GFF1278 0.67 -0.3 608,284 + GFF1278 0.82 -0.4 608,284 + GFF1278 0.82 -0.3 608,284 + GFF1278 0.82 -0.2 608,285 - GFF1278 0.83 +0.6 608,453 - GFF1279 0.18 -1.0 608,659 + GFF1279 0.43 -0.6 608,660 - GFF1279 0.43 +0.3 608,660 - GFF1279 0.43 -0.3 608,783 - GFF1279 0.58 +1.0 608,783 - GFF1279 0.58 -0.4 608,806 + GFF1279 0.60 +0.8 608,807 - GFF1279 0.61 -0.3 608,807 - GFF1279 0.61 +0.1 608,807 - GFF1279 0.61 +0.7 608,942 + GFF1279 0.77 -0.2 608,953 + GFF1279 0.78 +0.4 608,953 + GFF1279 0.78 +0.1 608,953 + GFF1279 0.78 +0.3 608,954 - GFF1279 0.78 +1.1 609,052 + +0.1 609,052 + -0.2 609,052 + -0.1 609,053 - -0.8 609,053 - +0.0 609,053 - -1.0 609,053 - -0.7 609,329 + GFF1280 0.25 +0.0 609,329 + GFF1280 0.25 -0.4 609,329 + GFF1280 0.25 +0.1 609,329 + GFF1280 0.25 -0.8 609,329 + GFF1280 0.25 +0.1 609,329 + GFF1280 0.25 -0.6 609,330 - GFF1280 0.26 -0.0 609,330 - GFF1280 0.26 -0.3 609,330 - GFF1280 0.26 +2.9 609,330 - GFF1280 0.26 -0.6 609,330 - GFF1280 0.26 -0.2 609,330 - GFF1280 0.26 -0.5 609,330 - GFF1280 0.26 -0.5 609,380 + GFF1280 0.33 +0.4 609,380 + GFF1280 0.33 +0.4 609,380 + GFF1280 0.33 -0.6 609,428 + GFF1280 0.39 +0.0 609,428 + GFF1280 0.39 -0.3 609,428 + GFF1280 0.39 +0.2 609,428 + GFF1280 0.39 -1.4 609,429 - GFF1280 0.40 +0.7 609,429 - GFF1280 0.40 -0.5 609,429 - GFF1280 0.40 -0.4 609,429 - GFF1280 0.40 -0.0 609,429 - GFF1280 0.40 -1.0 609,485 + GFF1280 0.47 -0.7 609,497 + GFF1280 0.49 -0.2 609,497 + GFF1280 0.49 -0.2 609,497 + GFF1280 0.49 -0.3 609,497 + GFF1280 0.49 -0.9 609,497 + GFF1280 0.49 -0.2 609,497 + GFF1280 0.49 -0.4 609,497 + GFF1280 0.49 -0.8 609,497 + GFF1280 0.49 -1.0 609,498 - GFF1280 0.49 +0.1 609,498 - GFF1280 0.49 -1.3 609,498 - GFF1280 0.49 +0.7 609,498 - GFF1280 0.49 -0.2 609,498 - GFF1280 0.49 +1.1 609,650 + GFF1280 0.71 -0.3 609,650 + GFF1280 0.71 -1.0 609,650 + GFF1280 0.71 -0.3 609,650 + GFF1280 0.71 -0.2 609,650 + GFF1280 0.71 +0.2 609,650 + GFF1280 0.71 +0.3 609,650 + GFF1280 0.71 +0.6 609,650 + GFF1280 0.71 +0.3 609,651 - GFF1280 0.71 +0.4 609,651 - GFF1280 0.71 +1.9 609,651 - GFF1280 0.71 -0.5 609,651 - GFF1280 0.71 +0.0 609,651 - GFF1280 0.71 -1.3 609,651 - GFF1280 0.71 -0.2 609,651 - GFF1280 0.71 -0.7 609,710 + GFF1280 0.79 -0.7 609,711 - GFF1280 0.79 +1.3 609,779 + GFF1280 0.89 -0.5 609,779 + GFF1280 0.89 +0.4 609,779 + GFF1280 0.89 -0.0 609,780 - GFF1280 0.89 -1.0 609,780 - GFF1280 0.89 -0.1 609,780 - GFF1280 0.89 -0.0 609,780 - GFF1280 0.89 -0.1 609,884 - -0.0 609,884 - -0.6 610,093 + GFF1281 0.34 -0.2 610,093 + GFF1281 0.34 -0.0 610,093 + GFF1281 0.34 +0.3 610,093 + GFF1281 0.34 +1.9 610,093 + GFF1281 0.34 -0.1 610,093 + GFF1281 0.34 +0.3 610,094 - GFF1281 0.34 -0.1 610,094 - GFF1281 0.34 -0.0 610,094 - GFF1281 0.34 -0.3
Or see this region's nucleotide sequence