Strain Fitness in Variovorax sp. SCN45 around GFF1190

Experiment: Community=Kojac gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=1
506,118	-		GFF1188	0.48	-0.4
506,118	-		GFF1188	0.48	-0.0
506,118	-		GFF1188	0.48	-0.1
506,118	-		GFF1188	0.48	-0.8
506,196	-		GFF1188	0.58	+0.2
506,196	-		GFF1188	0.58	-0.7
506,196	-		GFF1188	0.58	-2.2
506,628	-		GFF1189	0.33	-1.0
506,998	+		GFF1190	0.22	-0.1
506,999	-		GFF1190	0.22	-0.4
506,999	-		GFF1190	0.22	-0.4
506,999	-		GFF1190	0.22	+0.8
506,999	-		GFF1190	0.22	-0.2
507,109	+		GFF1190	0.32	+2.2
507,109	+		GFF1190	0.32	+0.4
507,110	-		GFF1190	0.32	+1.3
508,007	+				+1.0
508,008	-				+0.5
508,098	-				-0.7
508,290	-				+1.3
508,715	+				+1.3
508,715	+				-0.3
508,715	+				-0.3
508,716	-				-0.4
508,716	-				-0.7
508,716	-				+0.6
508,716	-				+0.4
508,716	-				-0.4
508,716	-				+1.5
508,716	-				-0.3
508,716	-				-0.4
508,716	-				-1.3