Strain Fitness in Variovorax sp. SCN45 around GFF1097

Experiment: Community=Kojac gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1095 and GFF1096 are separated by 16 nucleotidesGFF1096 and GFF1097 are separated by 28 nucleotidesGFF1097 and GFF1098 are separated by 44 nucleotides GFF1095 - Phosphate ABC transporter, ATP-binding protein PstB (TC 3.A.1.7.1), at 407,822 to 408,601 GFF1095 GFF1096 - Phosphate transport system regulatory protein PhoU, at 408,618 to 409,319 GFF1096 GFF1097 - Phosphate regulon transcriptional regulatory protein PhoB (SphR), at 409,348 to 410,040 GFF1097 GFF1098 - Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3), at 410,085 to 411,428 GFF1098 Position (kb) 409 410 411Strain fitness (log2 ratio) -2 -1 0 1 2 3at 408.434 kb on + strand, within GFF1095at 408.435 kb on - strand, within GFF1095at 408.435 kb on - strand, within GFF1095at 408.457 kb on + strand, within GFF1095at 408.457 kb on + strand, within GFF1095at 408.457 kb on + strand, within GFF1095at 408.458 kb on - strand, within GFF1095at 408.458 kb on - strand, within GFF1095at 408.458 kb on - strand, within GFF1095at 408.489 kb on - strand, within GFF1095at 408.497 kb on + strand, within GFF1095at 408.497 kb on + strand, within GFF1095at 408.497 kb on + strand, within GFF1095at 408.497 kb on + strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.503 kb on + strand, within GFF1095at 408.503 kb on + strand, within GFF1095at 408.504 kb on - strand, within GFF1095at 408.504 kb on - strand, within GFF1095at 408.578 kb on + strandat 408.578 kb on + strandat 408.579 kb on - strandat 408.579 kb on - strandat 408.579 kb on - strandat 408.579 kb on - strandat 408.579 kb on - strandat 408.726 kb on + strand, within GFF1096at 408.727 kb on - strand, within GFF1096at 408.727 kb on - strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.255 kb on - strandat 409.255 kb on - strandat 409.255 kb on - strandat 409.255 kb on - strandat 409.255 kb on - strandat 409.255 kb on - strandat 409.300 kb on + strandat 409.300 kb on + strandat 409.300 kb on + strandat 409.300 kb on + strandat 409.301 kb on - strandat 409.301 kb on - strandat 409.317 kb on + strandat 409.318 kb on - strandat 409.318 kb on - strandat 409.318 kb on - strandat 409.654 kb on + strand, within GFF1097at 409.654 kb on + strand, within GFF1097at 409.654 kb on + strand, within GFF1097at 409.654 kb on + strand, within GFF1097at 409.655 kb on - strand, within GFF1097at 409.655 kb on - strand, within GFF1097at 409.675 kb on - strand, within GFF1097at 409.731 kb on - strand, within GFF1097at 409.843 kb on + strand, within GFF1097at 409.844 kb on - strand, within GFF1097at 409.915 kb on + strand, within GFF1097at 409.915 kb on + strand, within GFF1097at 409.915 kb on + strand, within GFF1097at 409.915 kb on + strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 410.074 kb on - strandat 410.538 kb on + strand, within GFF1098at 410.538 kb on + strand, within GFF1098at 410.538 kb on + strand, within GFF1098at 410.556 kb on + strand, within GFF1098at 410.556 kb on + strand, within GFF1098at 410.557 kb on - strand, within GFF1098at 410.646 kb on + strand, within GFF1098at 410.647 kb on - strand, within GFF1098at 410.647 kb on - strand, within GFF1098at 410.647 kb on - strand, within GFF1098at 410.647 kb on - strand, within GFF1098at 410.827 kb on - strand, within GFF1098

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1
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408,434 + GFF1095 0.78 -0.0
408,435 - GFF1095 0.79 -0.1
408,435 - GFF1095 0.79 -0.6
408,457 + GFF1095 0.81 +1.0
408,457 + GFF1095 0.81 +0.0
408,457 + GFF1095 0.81 -1.7
408,458 - GFF1095 0.82 +0.2
408,458 - GFF1095 0.82 +0.2
408,458 - GFF1095 0.82 -0.6
408,489 - GFF1095 0.86 -0.6
408,497 + GFF1095 0.87 -1.2
408,497 + GFF1095 0.87 -1.2
408,497 + GFF1095 0.87 -1.4
408,497 + GFF1095 0.87 +0.6
408,498 - GFF1095 0.87 +0.4
408,498 - GFF1095 0.87 +0.6
408,498 - GFF1095 0.87 +1.3
408,498 - GFF1095 0.87 -0.2
408,498 - GFF1095 0.87 -0.6
408,498 - GFF1095 0.87 -0.4
408,498 - GFF1095 0.87 +0.0
408,498 - GFF1095 0.87 +0.9
408,503 + GFF1095 0.87 -0.2
408,503 + GFF1095 0.87 -0.4
408,504 - GFF1095 0.87 -0.8
408,504 - GFF1095 0.87 -0.5
408,578 + -0.2
408,578 + -0.1
408,579 - -0.8
408,579 - -0.9
408,579 - +0.3
408,579 - +0.3
408,579 - -0.5
408,726 + GFF1096 0.15 -1.1
408,727 - GFF1096 0.16 -1.3
408,727 - GFF1096 0.16 -0.4
409,143 + GFF1096 0.75 -0.7
409,143 + GFF1096 0.75 -1.5
409,143 + GFF1096 0.75 +0.2
409,143 + GFF1096 0.75 -0.9
409,143 + GFF1096 0.75 -0.7
409,143 + GFF1096 0.75 -1.3
409,143 + GFF1096 0.75 -0.0
409,143 + GFF1096 0.75 +0.5
409,143 + GFF1096 0.75 -0.2
409,143 + GFF1096 0.75 +3.3
409,143 + GFF1096 0.75 +0.2
409,143 + GFF1096 0.75 +0.9
409,143 - GFF1096 0.75 -1.1
409,144 - GFF1096 0.75 +0.2
409,144 - GFF1096 0.75 -0.2
409,144 - GFF1096 0.75 -1.3
409,144 - GFF1096 0.75 -0.4
409,144 - GFF1096 0.75 -0.4
409,144 - GFF1096 0.75 +0.3
409,144 - GFF1096 0.75 -0.4
409,144 - GFF1096 0.75 +0.1
409,144 - GFF1096 0.75 -0.4
409,144 - GFF1096 0.75 +0.3
409,144 - GFF1096 0.75 -2.2
409,144 - GFF1096 0.75 +2.1
409,144 - GFF1096 0.75 +0.5
409,144 - GFF1096 0.75 +0.1
409,254 + +0.9
409,254 + -0.1
409,254 + +0.3
409,254 + +0.2
409,254 + +0.9
409,254 + -0.4
409,254 + -0.8
409,254 + -0.5
409,254 + -0.8
409,254 + +0.2
409,254 + -0.3
409,254 + -0.7
409,254 + +0.5
409,254 + -0.5
409,254 + +0.1
409,255 - -2.1
409,255 - -0.5
409,255 - -0.0
409,255 - -0.4
409,255 - +1.3
409,255 - +0.1
409,300 + +0.0
409,300 + -0.1
409,300 + +0.7
409,300 + -0.4
409,301 - +1.3
409,301 - -1.8
409,317 + -0.7
409,318 - +0.2
409,318 - -0.1
409,318 - +0.3
409,654 + GFF1097 0.44 +0.5
409,654 + GFF1097 0.44 -0.5
409,654 + GFF1097 0.44 +0.5
409,654 + GFF1097 0.44 -0.9
409,655 - GFF1097 0.44 -0.4
409,655 - GFF1097 0.44 -1.8
409,675 - GFF1097 0.47 -0.2
409,731 - GFF1097 0.55 +0.8
409,843 + GFF1097 0.71 -0.2
409,844 - GFF1097 0.72 -0.7
409,915 + GFF1097 0.82 -0.8
409,915 + GFF1097 0.82 +0.6
409,915 + GFF1097 0.82 -0.4
409,915 + GFF1097 0.82 +1.3
409,916 - GFF1097 0.82 +0.2
409,916 - GFF1097 0.82 -0.4
409,916 - GFF1097 0.82 +0.9
409,916 - GFF1097 0.82 -0.7
409,916 - GFF1097 0.82 +0.8
409,916 - GFF1097 0.82 -0.6
409,916 - GFF1097 0.82 +0.1
409,916 - GFF1097 0.82 +0.6
409,916 - GFF1097 0.82 +0.7
409,916 - GFF1097 0.82 -0.7
409,916 - GFF1097 0.82 -1.1
410,074 - -1.0
410,538 + GFF1098 0.34 +0.4
410,538 + GFF1098 0.34 +1.3
410,538 + GFF1098 0.34 -2.3
410,556 + GFF1098 0.35 +0.7
410,556 + GFF1098 0.35 -1.4
410,557 - GFF1098 0.35 +0.3
410,646 + GFF1098 0.42 +1.3
410,647 - GFF1098 0.42 -0.3
410,647 - GFF1098 0.42 -0.5
410,647 - GFF1098 0.42 +1.3
410,647 - GFF1098 0.42 +0.5
410,827 - GFF1098 0.55 -0.4

Or see this region's nucleotide sequence