Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF102 and GFF103 are separated by 17 nucleotides GFF103 and GFF104 are separated by 71 nucleotides
GFF102 - General secretion pathway protein F, at 127,914 to 129,119
GFF102
GFF103 - General secretion pathway protein E, at 129,137 to 130,489
GFF103
GFF104 - General secretion pathway protein D, at 130,561 to 133,152
GFF104
Position (kb) 129
130
131 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 128.561 kb on - strand, within GFF102 at 128.615 kb on - strand, within GFF102 at 128.632 kb on - strand, within GFF102 at 128.734 kb on + strand, within GFF102 at 129.989 kb on + strand, within GFF103 at 129.990 kb on - strand, within GFF103 at 129.990 kb on - strand, within GFF103 at 130.372 kb on - strand at 130.694 kb on + strand at 130.694 kb on + strand at 130.694 kb on + strand at 130.694 kb on + strand at 130.694 kb on + strand at 130.694 kb on + strand at 130.694 kb on + strand at 130.694 kb on + strand at 130.695 kb on - strand at 130.695 kb on - strand at 130.695 kb on - strand at 130.695 kb on - strand at 130.695 kb on - strand at 130.695 kb on - strand at 130.695 kb on - strand at 130.695 kb on - strand at 130.695 kb on - strand at 130.802 kb on + strand at 130.802 kb on + strand at 130.802 kb on + strand at 130.803 kb on - strand at 131.090 kb on + strand, within GFF104 at 131.091 kb on - strand, within GFF104 at 131.138 kb on + strand, within GFF104 at 131.138 kb on + strand, within GFF104 at 131.139 kb on - strand, within GFF104 at 131.139 kb on - strand, within GFF104
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 128,561 - GFF102 0.54 -0.5 128,615 - GFF102 0.58 +0.1 128,632 - GFF102 0.60 +0.2 128,734 + GFF102 0.68 -0.9 129,989 + GFF103 0.63 -0.4 129,990 - GFF103 0.63 -2.6 129,990 - GFF103 0.63 -0.8 130,372 - -0.2 130,694 + -0.5 130,694 + +0.6 130,694 + -0.3 130,694 + +1.2 130,694 + -0.5 130,694 + -0.9 130,694 + +0.4 130,694 + -0.2 130,695 - -0.9 130,695 - -1.1 130,695 - +0.6 130,695 - -0.4 130,695 - +0.3 130,695 - +0.1 130,695 - +0.0 130,695 - +0.5 130,695 - +0.1 130,802 + +0.1 130,802 + -0.6 130,802 + -0.1 130,803 - -1.5 131,090 + GFF104 0.20 -0.7 131,091 - GFF104 0.20 -0.8 131,138 + GFF104 0.22 +0.1 131,138 + GFF104 0.22 +3.0 131,139 - GFF104 0.22 -0.7 131,139 - GFF104 0.22 +0.6
Or see this region's nucleotide sequence