Experiment: Control_ECRC98
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_27755 and JDDGAC_27760 are separated by 176 nucleotides JDDGAC_27760 and JDDGAC_27765 are separated by 43 nucleotides JDDGAC_27765 and ybcN are separated by 188 nucleotides ybcN and ninE overlap by 1 nucleotides ninE and ybcO overlap by 8 nucleotides ybcO and rusA overlap by 4 nucleotides rusA and ylcG overlap by 1 nucleotides ylcG and JDDGAC_27795 overlap by 4 nucleotides
JDDGAC_27755: JDDGAC_27755 - protein ren, at 5,329,936 to 5,330,220
_27755
JDDGAC_27760: JDDGAC_27760 - hypothetical protein, at 5,330,397 to 5,330,645
_27760
JDDGAC_27765: JDDGAC_27765 - hypothetical protein, at 5,330,689 to 5,330,970
_27765
JDDGAC_27770: ybcN - DNA base-flipping protein YbcN, at 5,331,159 to 5,331,614
ybcN
JDDGAC_27775: ninE - Protein ninE, at 5,331,614 to 5,331,784
ninE
JDDGAC_27780: ybcO - Putative nuclease YbcO, at 5,331,777 to 5,332,067
ybcO
JDDGAC_27785: rusA - crossover junction endodeoxyribonuclease RusA, at 5,332,064 to 5,332,426
rusA
JDDGAC_27790: ylcG - Uncharacterized protein YlcG, at 5,332,426 to 5,332,563
ylcG
JDDGAC_27795: JDDGAC_27795 - Orf33, orf151, orf56, orf96, rus, orf45, orf8, orf127, and nmpC genes, at 5,332,560 to 5,332,586
_27795
Position (kb) 5331
5332 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5330.207 kb on + strand at 5330.208 kb on - strand at 5330.210 kb on - strand at 5330.218 kb on + strand at 5330.219 kb on - strand at 5330.267 kb on - strand at 5330.267 kb on - strand at 5330.309 kb on + strand at 5330.309 kb on + strand at 5330.365 kb on + strand at 5330.365 kb on + strand at 5330.365 kb on + strand at 5330.368 kb on - strand at 5330.378 kb on + strand at 5330.378 kb on + strand at 5330.378 kb on + strand at 5330.378 kb on + strand at 5330.379 kb on - strand at 5330.408 kb on - strand at 5330.436 kb on - strand, within JDDGAC_27760 at 5330.447 kb on + strand, within JDDGAC_27760 at 5330.448 kb on - strand, within JDDGAC_27760 at 5330.512 kb on - strand, within JDDGAC_27760 at 5330.555 kb on - strand, within JDDGAC_27760 at 5330.566 kb on + strand, within JDDGAC_27760 at 5330.595 kb on + strand, within JDDGAC_27760 at 5330.596 kb on - strand, within JDDGAC_27760 at 5330.597 kb on + strand, within JDDGAC_27760 at 5330.597 kb on + strand, within JDDGAC_27760 at 5330.597 kb on + strand, within JDDGAC_27760 at 5330.618 kb on - strand, within JDDGAC_27760 at 5330.662 kb on + strand at 5330.664 kb on + strand at 5330.698 kb on + strand at 5330.733 kb on - strand, within JDDGAC_27765 at 5330.733 kb on - strand, within JDDGAC_27765 at 5330.879 kb on - strand, within JDDGAC_27765 at 5330.881 kb on + strand, within JDDGAC_27765 at 5330.888 kb on + strand, within JDDGAC_27765 at 5330.888 kb on + strand, within JDDGAC_27765 at 5330.888 kb on + strand, within JDDGAC_27765 at 5330.888 kb on + strand, within JDDGAC_27765 at 5330.903 kb on + strand, within JDDGAC_27765 at 5330.941 kb on + strand, within JDDGAC_27765 at 5330.971 kb on + strand at 5331.002 kb on + strand at 5331.060 kb on + strand at 5331.060 kb on + strand at 5331.070 kb on + strand at 5331.071 kb on - strand at 5331.071 kb on - strand at 5331.232 kb on - strand, within ybcN at 5331.266 kb on + strand, within ybcN at 5331.267 kb on - strand, within ybcN at 5331.267 kb on - strand, within ybcN at 5332.086 kb on + strand at 5332.220 kb on - strand, within rusA at 5332.438 kb on - strand at 5332.438 kb on - strand at 5332.481 kb on + strand, within ylcG at 5332.484 kb on - strand, within ylcG at 5332.559 kb on + strand at 5332.559 kb on + strand at 5332.574 kb on - strand, within JDDGAC_27795 at 5332.585 kb on - strand at 5332.588 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98 remove 5,330,207 + +0.2 5,330,208 - -0.1 5,330,210 - -0.9 5,330,218 + +1.8 5,330,219 - +0.0 5,330,267 - +0.9 5,330,267 - +0.2 5,330,309 + -1.9 5,330,309 + +0.4 5,330,365 + -3.1 5,330,365 + +0.9 5,330,365 + -0.6 5,330,368 - -0.8 5,330,378 + -2.2 5,330,378 + -1.9 5,330,378 + +0.6 5,330,378 + -0.3 5,330,379 - -0.6 5,330,408 - +1.1 5,330,436 - JDDGAC_27760 0.16 -2.4 5,330,447 + JDDGAC_27760 0.20 -0.8 5,330,448 - JDDGAC_27760 0.20 +0.3 5,330,512 - JDDGAC_27760 0.46 -1.0 5,330,555 - JDDGAC_27760 0.63 -0.4 5,330,566 + JDDGAC_27760 0.68 -0.9 5,330,595 + JDDGAC_27760 0.80 +0.7 5,330,596 - JDDGAC_27760 0.80 +0.4 5,330,597 + JDDGAC_27760 0.80 -0.6 5,330,597 + JDDGAC_27760 0.80 +0.9 5,330,597 + JDDGAC_27760 0.80 -0.7 5,330,618 - JDDGAC_27760 0.89 -0.8 5,330,662 + +2.4 5,330,664 + +1.1 5,330,698 + +2.2 5,330,733 - JDDGAC_27765 0.16 -1.6 5,330,733 - JDDGAC_27765 0.16 -0.9 5,330,879 - JDDGAC_27765 0.67 +3.9 5,330,881 + JDDGAC_27765 0.68 -1.5 5,330,888 + JDDGAC_27765 0.71 -0.3 5,330,888 + JDDGAC_27765 0.71 +0.6 5,330,888 + JDDGAC_27765 0.71 +0.4 5,330,888 + JDDGAC_27765 0.71 -1.9 5,330,903 + JDDGAC_27765 0.76 -2.2 5,330,941 + JDDGAC_27765 0.89 -0.4 5,330,971 + +0.9 5,331,002 + +1.2 5,331,060 + +0.9 5,331,060 + -0.9 5,331,070 + +0.4 5,331,071 - -1.6 5,331,071 - -0.9 5,331,232 - ybcN JDDGAC_27770 0.16 -0.7 5,331,266 + ybcN JDDGAC_27770 0.23 -0.7 5,331,267 - ybcN JDDGAC_27770 0.24 +1.2 5,331,267 - ybcN JDDGAC_27770 0.24 -1.5 5,332,086 + +0.0 5,332,220 - rusA JDDGAC_27785 0.43 -0.1 5,332,438 - -1.6 5,332,438 - +0.1 5,332,481 + ylcG JDDGAC_27790 0.40 -0.9 5,332,484 - ylcG JDDGAC_27790 0.42 +0.9 5,332,559 + -2.6 5,332,559 + +0.6 5,332,574 - JDDGAC_27795 0.52 +3.0 5,332,585 - -1.4 5,332,588 - -0.4
Or see this region's nucleotide sequence