Strain Fitness in Escherichia coli ECRC98 around JDDGAC_20370

Experiment: Control_ECRC98

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Control_ECRC98
3,900,990	+	rimI	JDDGAC_20360	0.72	-1.1
3,900,990	+	rimI	JDDGAC_20360	0.72	-0.3
3,900,991	-	rimI	JDDGAC_20360	0.72	-2.5
3,900,991	-	rimI	JDDGAC_20360	0.72	+0.0
3,900,991	-	rimI	JDDGAC_20360	0.72	+0.9
3,901,056	+	rimI	JDDGAC_20360	0.84	-2.5
3,901,088	+				-0.8
3,901,122	+				-2.1
3,901,122	+				+0.4
3,901,184	+	panM	JDDGAC_20365	0.13	+0.3
3,901,184	+	panM	JDDGAC_20365	0.13	-1.6
3,901,279	+	panM	JDDGAC_20365	0.38	-1.0
3,901,280	-	panM	JDDGAC_20365	0.38	-0.3
3,901,399	+	panM	JDDGAC_20365	0.69	-2.6
3,901,399	+	panM	JDDGAC_20365	0.69	-0.3
3,901,530	+				+1.1
3,901,531	-				+0.0
3,901,531	-				+1.5
3,901,567	+				+1.1
3,901,626	+				-2.5
3,901,638	+				-1.1
3,901,639	-				+0.3
3,901,961	+				-0.4
3,901,961	+				+2.9
3,902,018	+				-0.1
3,902,100	-	livK	JDDGAC_20370	0.14	+1.8
3,902,155	-	livK	JDDGAC_20370	0.19	-0.3
3,902,219	+	livK	JDDGAC_20370	0.25	-0.4
3,902,220	-	livK	JDDGAC_20370	0.25	-1.3
3,902,220	-	livK	JDDGAC_20370	0.25	-0.1
3,902,223	+	livK	JDDGAC_20370	0.25	-1.5
3,902,223	+	livK	JDDGAC_20370	0.25	-4.2
3,902,223	+	livK	JDDGAC_20370	0.25	+1.0
3,902,223	+	livK	JDDGAC_20370	0.25	+1.6
3,902,223	+	livK	JDDGAC_20370	0.25	+1.1
3,902,224	-	livK	JDDGAC_20370	0.25	-0.9
3,902,252	+	livK	JDDGAC_20370	0.28	+0.9
3,902,253	-	livK	JDDGAC_20370	0.28	-1.6
3,902,270	+	livK	JDDGAC_20370	0.30	-0.2
3,902,271	-	livK	JDDGAC_20370	0.30	+1.7
3,902,274	+	livK	JDDGAC_20370	0.30	+0.3
3,902,274	+	livK	JDDGAC_20370	0.30	+0.6
3,902,275	-	livK	JDDGAC_20370	0.30	+1.1
3,902,275	-	livK	JDDGAC_20370	0.30	-1.6
3,902,288	+	livK	JDDGAC_20370	0.31	-2.8
3,902,294	+	livK	JDDGAC_20370	0.32	+2.0
3,902,295	-	livK	JDDGAC_20370	0.32	-0.4
3,902,295	-	livK	JDDGAC_20370	0.32	-2.7
3,902,351	+	livK	JDDGAC_20370	0.37	+1.2
3,902,352	-	livK	JDDGAC_20370	0.37	-0.7
3,902,352	-	livK	JDDGAC_20370	0.37	-2.8
3,902,357	+	livK	JDDGAC_20370	0.37	-1.1
3,902,400	+	livK	JDDGAC_20370	0.41	-0.4
3,902,400	+	livK	JDDGAC_20370	0.41	-1.2
3,902,401	-	livK	JDDGAC_20370	0.41	-0.1
3,902,532	-	livK	JDDGAC_20370	0.53	+0.7
3,902,614	-	livK	JDDGAC_20370	0.61	-2.3
3,902,676	-	livK	JDDGAC_20370	0.66	-0.4
3,902,696	+	livK	JDDGAC_20370	0.68	+1.1
3,902,750	+	livK	JDDGAC_20370	0.73	+0.3
3,902,750	+	livK	JDDGAC_20370	0.73	-2.3
3,902,835	+	livK	JDDGAC_20370	0.81	-1.4
3,902,835	+	livK	JDDGAC_20370	0.81	-1.0
3,902,835	+	livK	JDDGAC_20370	0.81	-1.6
3,902,836	-	livK	JDDGAC_20370	0.81	-1.5
3,902,836	-	livK	JDDGAC_20370	0.81	+1.0
3,902,836	-	livK	JDDGAC_20370	0.81	-1.1
3,902,888	+	livK	JDDGAC_20370	0.85	+0.3
3,902,927	-	livK	JDDGAC_20370	0.89	-1.9
3,903,092	+				+0.6
3,903,097	+				-0.5
3,903,097	+				-1.6
3,903,097	+				-1.3
3,903,098	-				-0.9
3,903,098	-				-1.3
3,903,098	-				+1.8
3,903,098	-				-0.7
3,903,157	+				+0.1
3,903,158	-				-3.4
3,903,161	+				+1.3
3,903,162	-				-0.6
3,903,183	-				-0.8
3,903,183	-				+1.1
3,903,236	+	livH	JDDGAC_20375	0.15	+1.0
3,903,236	+	livH	JDDGAC_20375	0.15	+0.5
3,903,236	+	livH	JDDGAC_20375	0.15	+1.2
3,903,237	-	livH	JDDGAC_20375	0.15	-0.4
3,903,251	+	livH	JDDGAC_20375	0.17	-0.7
3,903,251	+	livH	JDDGAC_20375	0.17	-0.4
3,903,252	-	livH	JDDGAC_20375	0.17	+1.0
3,903,252	-	livH	JDDGAC_20375	0.17	-0.1
3,903,252	-	livH	JDDGAC_20375	0.17	-1.7
3,903,262	+	livH	JDDGAC_20375	0.18	-1.0
3,903,262	+	livH	JDDGAC_20375	0.18	-1.0
3,903,263	-	livH	JDDGAC_20375	0.18	-0.9
3,903,398	-	livH	JDDGAC_20375	0.32	+1.3
3,903,403	+	livH	JDDGAC_20375	0.33	+1.2
3,903,458	+	livH	JDDGAC_20375	0.39	+1.3
3,903,458	+	livH	JDDGAC_20375	0.39	-1.0
3,903,508	+	livH	JDDGAC_20375	0.44	+0.2
3,903,509	-	livH	JDDGAC_20375	0.44	+0.6
3,903,509	-	livH	JDDGAC_20375	0.44	-0.2
3,903,533	-	livH	JDDGAC_20375	0.47	+1.7
3,903,553	+	livH	JDDGAC_20375	0.49	+0.5
3,903,553	+	livH	JDDGAC_20375	0.49	+2.1
3,903,553	+	livH	JDDGAC_20375	0.49	-0.3
3,903,553	+	livH	JDDGAC_20375	0.49	+0.8
3,903,554	-	livH	JDDGAC_20375	0.49	+0.1
3,903,556	+	livH	JDDGAC_20375	0.49	-0.4
3,903,557	-	livH	JDDGAC_20375	0.50	+0.9
3,903,626	+	livH	JDDGAC_20375	0.57	-0.9
3,903,795	-	livH	JDDGAC_20375	0.75	-0.4
3,903,795	-	livH	JDDGAC_20375	0.75	+3.1
3,903,806	-	livH	JDDGAC_20375	0.76	-0.8
3,903,933	-				-0.3
3,903,934	+				-0.6
3,904,011	+				-0.2
3,904,035	+				-1.1
3,904,036	-				+1.7
3,904,036	-				-2.2