Strain Fitness in Escherichia coli ECRC98 around JDDGAC_05700

Experiment: Control_ECRC98

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntgpL and JDDGAC_05690 are separated by 8 nucleotidesJDDGAC_05690 and gp41 are separated by 14 nucleotidesgp41 and hI1514 are separated by 126 nucleotideshI1514 and JDDGAC_05705 overlap by 14 nucleotides JDDGAC_05685: gpL - phage tail protein, at 989,733 to 991,235 gpL JDDGAC_05690: JDDGAC_05690 - phage tail protein, at 991,244 to 991,609 _05690 JDDGAC_05695: gp41 - Phage tail assembly chaperone proteins, E, or 41 or 14, at 991,624 to 992,100 gp41 JDDGAC_05700: hI1514 - tail tape measure protein, at 992,227 to 994,302 hI1514 JDDGAC_05705: JDDGAC_05705 - Mu-like prophage DNA circulation protein, at 994,289 to 995,638 _05705 Position (kb) 992 993 994 995Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 991.239 kb on - strandat 991.319 kb on - strand, within JDDGAC_05690at 991.319 kb on - strand, within JDDGAC_05690at 991.370 kb on + strand, within JDDGAC_05690at 991.371 kb on - strand, within JDDGAC_05690at 991.745 kb on - strand, within gp41at 991.827 kb on + strand, within gp41at 991.985 kb on + strand, within gp41at 991.986 kb on - strand, within gp41at 991.986 kb on - strand, within gp41at 992.222 kb on + strandat 992.222 kb on + strandat 992.255 kb on + strandat 992.390 kb on + strandat 992.390 kb on + strandat 992.540 kb on + strand, within hI1514at 992.540 kb on + strand, within hI1514at 992.540 kb on + strand, within hI1514at 992.540 kb on + strand, within hI1514at 992.541 kb on - strand, within hI1514at 992.541 kb on - strand, within hI1514at 992.542 kb on + strand, within hI1514at 992.542 kb on + strand, within hI1514at 992.563 kb on - strand, within hI1514at 992.590 kb on + strand, within hI1514at 992.590 kb on + strand, within hI1514at 992.614 kb on + strand, within hI1514at 992.710 kb on + strand, within hI1514at 992.711 kb on - strand, within hI1514at 992.712 kb on + strand, within hI1514at 992.712 kb on + strand, within hI1514at 992.713 kb on - strand, within hI1514at 992.713 kb on - strand, within hI1514at 992.845 kb on + strand, within hI1514at 992.845 kb on + strand, within hI1514at 992.845 kb on + strand, within hI1514at 992.845 kb on + strand, within hI1514at 992.845 kb on + strand, within hI1514at 992.846 kb on - strand, within hI1514at 992.846 kb on - strand, within hI1514at 992.846 kb on - strand, within hI1514at 992.846 kb on - strand, within hI1514at 992.902 kb on - strand, within hI1514at 993.278 kb on - strand, within hI1514at 993.331 kb on + strand, within hI1514at 993.383 kb on - strand, within hI1514at 993.391 kb on + strand, within hI1514at 993.397 kb on + strand, within hI1514at 993.449 kb on + strand, within hI1514at 993.573 kb on + strand, within hI1514at 993.574 kb on - strand, within hI1514at 993.623 kb on + strand, within hI1514at 993.624 kb on - strand, within hI1514at 993.624 kb on - strand, within hI1514at 993.669 kb on + strand, within hI1514at 993.670 kb on - strand, within hI1514at 994.072 kb on - strand, within hI1514at 994.084 kb on + strand, within hI1514at 994.084 kb on + strand, within hI1514at 994.084 kb on + strand, within hI1514at 994.084 kb on + strand, within hI1514at 994.092 kb on + strand, within hI1514at 994.096 kb on + strandat 994.097 kb on - strandat 994.097 kb on - strandat 994.097 kb on - strandat 994.233 kb on + strandat 994.414 kb on - strandat 994.429 kb on + strand, within JDDGAC_05705at 994.429 kb on + strand, within JDDGAC_05705at 994.430 kb on - strand, within JDDGAC_05705at 994.547 kb on + strand, within JDDGAC_05705at 994.557 kb on + strand, within JDDGAC_05705at 994.557 kb on + strand, within JDDGAC_05705at 994.590 kb on - strand, within JDDGAC_05705at 994.590 kb on - strand, within JDDGAC_05705at 994.628 kb on - strand, within JDDGAC_05705at 994.848 kb on + strand, within JDDGAC_05705at 994.855 kb on + strand, within JDDGAC_05705at 995.082 kb on + strand, within JDDGAC_05705at 995.097 kb on - strand, within JDDGAC_05705

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98
remove
991,239 - +1.0
991,319 - JDDGAC_05690 0.20 -0.1
991,319 - JDDGAC_05690 0.20 +0.7
991,370 + JDDGAC_05690 0.34 -1.1
991,371 - JDDGAC_05690 0.35 +0.2
991,745 - gp41 JDDGAC_05695 0.25 -1.0
991,827 + gp41 JDDGAC_05695 0.43 +1.4
991,985 + gp41 JDDGAC_05695 0.76 +1.2
991,986 - gp41 JDDGAC_05695 0.76 +0.7
991,986 - gp41 JDDGAC_05695 0.76 -1.7
992,222 + +1.2
992,222 + -1.2
992,255 + -2.1
992,390 + -0.4
992,390 + -1.9
992,540 + hI1514 JDDGAC_05700 0.15 +1.9
992,540 + hI1514 JDDGAC_05700 0.15 -1.1
992,540 + hI1514 JDDGAC_05700 0.15 +1.2
992,540 + hI1514 JDDGAC_05700 0.15 +0.9
992,541 - hI1514 JDDGAC_05700 0.15 +0.9
992,541 - hI1514 JDDGAC_05700 0.15 -1.0
992,542 + hI1514 JDDGAC_05700 0.15 +1.5
992,542 + hI1514 JDDGAC_05700 0.15 +0.4
992,563 - hI1514 JDDGAC_05700 0.16 -1.6
992,590 + hI1514 JDDGAC_05700 0.17 -2.1
992,590 + hI1514 JDDGAC_05700 0.17 +0.5
992,614 + hI1514 JDDGAC_05700 0.19 -2.4
992,710 + hI1514 JDDGAC_05700 0.23 -1.9
992,711 - hI1514 JDDGAC_05700 0.23 -0.1
992,712 + hI1514 JDDGAC_05700 0.23 +0.6
992,712 + hI1514 JDDGAC_05700 0.23 -0.4
992,713 - hI1514 JDDGAC_05700 0.23 +3.2
992,713 - hI1514 JDDGAC_05700 0.23 +1.2
992,845 + hI1514 JDDGAC_05700 0.30 -0.3
992,845 + hI1514 JDDGAC_05700 0.30 -1.6
992,845 + hI1514 JDDGAC_05700 0.30 +1.3
992,845 + hI1514 JDDGAC_05700 0.30 -2.2
992,845 + hI1514 JDDGAC_05700 0.30 -0.7
992,846 - hI1514 JDDGAC_05700 0.30 +1.1
992,846 - hI1514 JDDGAC_05700 0.30 -1.7
992,846 - hI1514 JDDGAC_05700 0.30 +0.5
992,846 - hI1514 JDDGAC_05700 0.30 -1.6
992,902 - hI1514 JDDGAC_05700 0.33 +3.9
993,278 - hI1514 JDDGAC_05700 0.51 +3.3
993,331 + hI1514 JDDGAC_05700 0.53 +3.2
993,383 - hI1514 JDDGAC_05700 0.56 -1.5
993,391 + hI1514 JDDGAC_05700 0.56 -2.4
993,397 + hI1514 JDDGAC_05700 0.56 -0.3
993,449 + hI1514 JDDGAC_05700 0.59 -1.2
993,573 + hI1514 JDDGAC_05700 0.65 +1.3
993,574 - hI1514 JDDGAC_05700 0.65 -1.8
993,623 + hI1514 JDDGAC_05700 0.67 +2.5
993,624 - hI1514 JDDGAC_05700 0.67 +0.7
993,624 - hI1514 JDDGAC_05700 0.67 -0.1
993,669 + hI1514 JDDGAC_05700 0.69 -2.8
993,670 - hI1514 JDDGAC_05700 0.70 -1.6
994,072 - hI1514 JDDGAC_05700 0.89 +0.6
994,084 + hI1514 JDDGAC_05700 0.89 -0.0
994,084 + hI1514 JDDGAC_05700 0.89 -0.6
994,084 + hI1514 JDDGAC_05700 0.89 -1.1
994,084 + hI1514 JDDGAC_05700 0.89 +1.6
994,092 + hI1514 JDDGAC_05700 0.90 -0.4
994,096 + -1.3
994,097 - -1.4
994,097 - +0.9
994,097 - +0.9
994,233 + -1.8
994,414 - -2.2
994,429 + JDDGAC_05705 0.10 +0.4
994,429 + JDDGAC_05705 0.10 -1.7
994,430 - JDDGAC_05705 0.10 -1.6
994,547 + JDDGAC_05705 0.19 +2.1
994,557 + JDDGAC_05705 0.20 -0.7
994,557 + JDDGAC_05705 0.20 -2.2
994,590 - JDDGAC_05705 0.22 -0.5
994,590 - JDDGAC_05705 0.22 +0.2
994,628 - JDDGAC_05705 0.25 -0.8
994,848 + JDDGAC_05705 0.41 +0.6
994,855 + JDDGAC_05705 0.42 +0.0
995,082 + JDDGAC_05705 0.59 +2.1
995,097 - JDDGAC_05705 0.60 -1.7

Or see this region's nucleotide sequence