Strain Fitness in Variovorax sp. SCN45 around GFF962

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF960 and GFF961 are separated by 40 nucleotidesGFF961 and GFF962 are separated by 18 nucleotidesGFF962 and GFF963 are separated by 30 nucleotides GFF960 - Dihydroorotate dehydrogenase (quinone) (EC 1.3.5.2), at 271,208 to 272,287 GFF960 GFF961 - Ribose-5-phosphate isomerase A (EC 5.3.1.6), at 272,328 to 273,041 GFF961 GFF962 - FIG00932012: hypothetical protein, at 273,060 to 273,707 GFF962 GFF963 - Oligopeptidase A (EC 3.4.24.70), at 273,738 to 275,807 GFF963 Position (kb) 273 274Strain fitness (log2 ratio) -2 -1 0 1 2at 272.154 kb on + strand, within GFF960at 272.155 kb on - strand, within GFF960at 272.292 kb on + strandat 272.292 kb on + strandat 272.293 kb on - strandat 272.293 kb on - strandat 273.152 kb on + strand, within GFF962at 273.152 kb on + strand, within GFF962at 273.256 kb on + strand, within GFF962at 273.256 kb on + strand, within GFF962at 273.256 kb on + strand, within GFF962at 273.256 kb on + strand, within GFF962at 273.256 kb on + strand, within GFF962at 273.256 kb on + strand, within GFF962at 273.257 kb on - strand, within GFF962at 273.454 kb on + strand, within GFF962at 273.454 kb on + strand, within GFF962at 273.454 kb on + strand, within GFF962at 273.454 kb on + strand, within GFF962at 273.454 kb on + strand, within GFF962at 273.455 kb on - strand, within GFF962at 273.455 kb on - strand, within GFF962at 273.455 kb on - strand, within GFF962at 273.497 kb on - strand, within GFF962at 273.616 kb on + strand, within GFF962at 273.616 kb on + strand, within GFF962at 273.691 kb on + strandat 273.691 kb on + strandat 273.691 kb on + strandat 273.692 kb on - strandat 273.716 kb on + strandat 273.716 kb on + strandat 273.717 kb on - strandat 273.717 kb on - strandat 273.717 kb on - strandat 273.868 kb on + strandat 273.868 kb on + strandat 273.869 kb on - strandat 273.869 kb on - strandat 273.869 kb on - strandat 273.869 kb on - strandat 273.931 kb on + strandat 273.932 kb on - strandat 273.964 kb on + strand, within GFF963at 273.964 kb on + strand, within GFF963at 273.964 kb on + strand, within GFF963at 273.964 kb on + strand, within GFF963at 273.964 kb on + strand, within GFF963at 273.964 kb on + strand, within GFF963at 273.964 kb on + strand, within GFF963at 273.964 kb on + strand, within GFF963at 273.964 kb on + strand, within GFF963at 273.964 kb on + strand, within GFF963at 273.964 kb on + strand, within GFF963at 273.964 kb on + strand, within GFF963at 273.964 kb on + strand, within GFF963at 273.964 kb on + strand, within GFF963at 273.964 kb on + strand, within GFF963at 273.964 kb on + strand, within GFF963at 273.964 kb on + strand, within GFF963at 273.964 kb on + strand, within GFF963at 273.964 kb on + strand, within GFF963at 273.964 kb on + strand, within GFF963at 273.964 kb on + strand, within GFF963at 273.964 kb on + strand, within GFF963at 273.964 kb on + strand, within GFF963at 273.965 kb on - strand, within GFF963at 273.965 kb on - strand, within GFF963at 273.965 kb on - strand, within GFF963at 273.965 kb on - strand, within GFF963at 273.965 kb on - strand, within GFF963at 273.965 kb on - strand, within GFF963at 273.965 kb on - strand, within GFF963at 273.965 kb on - strand, within GFF963at 273.965 kb on - strand, within GFF963at 273.965 kb on - strand, within GFF963at 273.965 kb on - strand, within GFF963at 273.965 kb on - strand, within GFF963at 273.965 kb on - strand, within GFF963at 273.965 kb on - strand, within GFF963at 273.965 kb on - strand, within GFF963at 273.965 kb on - strand, within GFF963at 273.970 kb on + strand, within GFF963at 273.970 kb on + strand, within GFF963at 273.970 kb on + strand, within GFF963at 273.970 kb on + strand, within GFF963at 273.970 kb on + strand, within GFF963at 273.970 kb on + strand, within GFF963at 273.970 kb on + strand, within GFF963at 273.970 kb on + strand, within GFF963at 273.970 kb on + strand, within GFF963at 273.970 kb on + strand, within GFF963at 273.970 kb on + strand, within GFF963at 273.971 kb on - strand, within GFF963at 273.971 kb on - strand, within GFF963at 273.971 kb on - strand, within GFF963at 273.971 kb on - strand, within GFF963at 273.971 kb on - strand, within GFF963at 273.971 kb on - strand, within GFF963at 273.971 kb on - strand, within GFF963at 273.971 kb on - strand, within GFF963at 273.971 kb on - strand, within GFF963at 273.971 kb on - strand, within GFF963at 273.971 kb on - strand, within GFF963at 273.971 kb on - strand, within GFF963at 273.971 kb on - strand, within GFF963at 273.971 kb on - strand, within GFF963at 273.971 kb on - strand, within GFF963at 273.971 kb on - strand, within GFF963at 273.973 kb on + strand, within GFF963at 273.973 kb on + strand, within GFF963at 273.974 kb on - strand, within GFF963at 273.974 kb on - strand, within GFF963at 273.974 kb on - strand, within GFF963at 273.974 kb on - strand, within GFF963at 274.008 kb on + strand, within GFF963at 274.013 kb on + strand, within GFF963at 274.013 kb on + strand, within GFF963at 274.013 kb on + strand, within GFF963at 274.013 kb on + strand, within GFF963at 274.013 kb on + strand, within GFF963at 274.013 kb on + strand, within GFF963at 274.014 kb on - strand, within GFF963at 274.117 kb on + strand, within GFF963at 274.117 kb on + strand, within GFF963at 274.117 kb on + strand, within GFF963at 274.117 kb on + strand, within GFF963at 274.117 kb on + strand, within GFF963at 274.117 kb on + strand, within GFF963at 274.118 kb on - strand, within GFF963at 274.118 kb on - strand, within GFF963at 274.118 kb on - strand, within GFF963at 274.591 kb on + strand, within GFF963at 274.591 kb on + strand, within GFF963at 274.591 kb on + strand, within GFF963at 274.592 kb on - strand, within GFF963at 274.592 kb on - strand, within GFF963at 274.592 kb on - strand, within GFF963at 274.592 kb on - strand, within GFF963at 274.642 kb on + strand, within GFF963at 274.642 kb on + strand, within GFF963at 274.642 kb on + strand, within GFF963at 274.643 kb on - strand, within GFF963at 274.643 kb on - strand, within GFF963at 274.643 kb on - strand, within GFF963

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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272,154 + GFF960 0.88 -1.0
272,155 - GFF960 0.88 -1.4
272,292 + +0.4
272,292 + -2.0
272,293 - -0.5
272,293 - -0.2
273,152 + GFF962 0.14 -0.6
273,152 + GFF962 0.14 -0.5
273,256 + GFF962 0.30 +0.5
273,256 + GFF962 0.30 -1.0
273,256 + GFF962 0.30 -2.0
273,256 + GFF962 0.30 +0.4
273,256 + GFF962 0.30 -1.7
273,256 + GFF962 0.30 -0.9
273,257 - GFF962 0.30 -1.4
273,454 + GFF962 0.61 -1.3
273,454 + GFF962 0.61 -0.2
273,454 + GFF962 0.61 +0.1
273,454 + GFF962 0.61 -0.6
273,454 + GFF962 0.61 +0.1
273,455 - GFF962 0.61 -0.7
273,455 - GFF962 0.61 -1.0
273,455 - GFF962 0.61 -1.9
273,497 - GFF962 0.67 -1.0
273,616 + GFF962 0.86 -1.8
273,616 + GFF962 0.86 -0.3
273,691 + +0.3
273,691 + -0.2
273,691 + -0.4
273,692 - -0.3
273,716 + +0.2
273,716 + -0.5
273,717 - +0.7
273,717 - -1.0
273,717 - +0.6
273,868 + -0.1
273,868 + -1.2
273,869 - -0.1
273,869 - -0.5
273,869 - -0.5
273,869 - +0.5
273,931 + -1.8
273,932 - -0.5
273,964 + GFF963 0.11 -0.2
273,964 + GFF963 0.11 +0.0
273,964 + GFF963 0.11 -1.0
273,964 + GFF963 0.11 -0.8
273,964 + GFF963 0.11 -2.0
273,964 + GFF963 0.11 -0.2
273,964 + GFF963 0.11 -0.3
273,964 + GFF963 0.11 -0.4
273,964 + GFF963 0.11 -0.1
273,964 + GFF963 0.11 -0.0
273,964 + GFF963 0.11 +0.0
273,964 + GFF963 0.11 -0.6
273,964 + GFF963 0.11 -0.2
273,964 + GFF963 0.11 -2.0
273,964 + GFF963 0.11 +0.2
273,964 + GFF963 0.11 +0.4
273,964 + GFF963 0.11 +0.5
273,964 + GFF963 0.11 +2.2
273,964 + GFF963 0.11 -0.4
273,964 + GFF963 0.11 -0.6
273,964 + GFF963 0.11 -0.2
273,964 + GFF963 0.11 -0.4
273,964 + GFF963 0.11 +0.8
273,965 - GFF963 0.11 -0.3
273,965 - GFF963 0.11 -0.6
273,965 - GFF963 0.11 -0.9
273,965 - GFF963 0.11 -1.2
273,965 - GFF963 0.11 +0.7
273,965 - GFF963 0.11 -0.2
273,965 - GFF963 0.11 -0.0
273,965 - GFF963 0.11 -0.5
273,965 - GFF963 0.11 +0.0
273,965 - GFF963 0.11 +1.4
273,965 - GFF963 0.11 -0.2
273,965 - GFF963 0.11 -1.5
273,965 - GFF963 0.11 +0.7
273,965 - GFF963 0.11 -0.5
273,965 - GFF963 0.11 +0.1
273,965 - GFF963 0.11 +1.0
273,970 + GFF963 0.11 -0.5
273,970 + GFF963 0.11 +0.4
273,970 + GFF963 0.11 +0.9
273,970 + GFF963 0.11 -1.2
273,970 + GFF963 0.11 +0.7
273,970 + GFF963 0.11 -0.4
273,970 + GFF963 0.11 +0.1
273,970 + GFF963 0.11 -0.4
273,970 + GFF963 0.11 -0.2
273,970 + GFF963 0.11 -0.5
273,970 + GFF963 0.11 +0.2
273,971 - GFF963 0.11 -1.1
273,971 - GFF963 0.11 +0.3
273,971 - GFF963 0.11 -1.1
273,971 - GFF963 0.11 -0.6
273,971 - GFF963 0.11 -0.3
273,971 - GFF963 0.11 -0.1
273,971 - GFF963 0.11 +0.3
273,971 - GFF963 0.11 -0.5
273,971 - GFF963 0.11 -0.8
273,971 - GFF963 0.11 -1.4
273,971 - GFF963 0.11 +1.1
273,971 - GFF963 0.11 -0.3
273,971 - GFF963 0.11 +0.4
273,971 - GFF963 0.11 +0.0
273,971 - GFF963 0.11 +0.4
273,971 - GFF963 0.11 -0.6
273,973 + GFF963 0.11 -0.1
273,973 + GFF963 0.11 -0.5
273,974 - GFF963 0.11 +0.0
273,974 - GFF963 0.11 -0.1
273,974 - GFF963 0.11 -0.8
273,974 - GFF963 0.11 -0.9
274,008 + GFF963 0.13 +0.8
274,013 + GFF963 0.13 -0.5
274,013 + GFF963 0.13 +0.6
274,013 + GFF963 0.13 +0.1
274,013 + GFF963 0.13 -0.0
274,013 + GFF963 0.13 +0.5
274,013 + GFF963 0.13 -1.8
274,014 - GFF963 0.13 +0.0
274,117 + GFF963 0.18 +0.2
274,117 + GFF963 0.18 -0.1
274,117 + GFF963 0.18 -2.3
274,117 + GFF963 0.18 -0.5
274,117 + GFF963 0.18 -0.3
274,117 + GFF963 0.18 -0.2
274,118 - GFF963 0.18 +0.4
274,118 - GFF963 0.18 -1.6
274,118 - GFF963 0.18 -0.1
274,591 + GFF963 0.41 -0.9
274,591 + GFF963 0.41 -0.6
274,591 + GFF963 0.41 -0.2
274,592 - GFF963 0.41 +0.8
274,592 - GFF963 0.41 -0.2
274,592 - GFF963 0.41 -0.4
274,592 - GFF963 0.41 -0.3
274,642 + GFF963 0.44 -0.5
274,642 + GFF963 0.44 +1.0
274,642 + GFF963 0.44 -0.1
274,643 - GFF963 0.44 -1.3
274,643 - GFF963 0.44 -0.2
274,643 - GFF963 0.44 -0.2

Or see this region's nucleotide sequence