Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF861 and GFF862 are separated by 11 nucleotides GFF862 and GFF863 overlap by 4 nucleotides
GFF861 - S-adenosylhomocysteine deaminase (EC 3.5.4.28); Methylthioadenosine deaminase, at 168,094 to 169,617
GFF861
GFF862 - hypothetical protein, at 169,629 to 170,531
GFF862
GFF863 - KEGG: simple sugar transport system permease protein, at 170,528 to 171,562
GFF863
Position (kb) 169
170
171 Strain fitness (log2 ratio) -1
0
1 at 169.331 kb on + strand, within GFF861 at 169.331 kb on + strand, within GFF861 at 169.332 kb on - strand, within GFF861 at 169.337 kb on + strand, within GFF861 at 169.337 kb on + strand, within GFF861 at 169.337 kb on + strand, within GFF861 at 169.338 kb on - strand, within GFF861 at 169.343 kb on + strand, within GFF861 at 169.343 kb on + strand, within GFF861 at 169.344 kb on - strand, within GFF861 at 169.344 kb on - strand, within GFF861 at 169.344 kb on - strand, within GFF861 at 169.344 kb on - strand, within GFF861 at 169.344 kb on - strand, within GFF861 at 169.377 kb on - strand, within GFF861 at 169.574 kb on - strand at 169.696 kb on - strand at 169.696 kb on - strand at 169.759 kb on + strand, within GFF862 at 169.760 kb on - strand, within GFF862 at 169.760 kb on - strand, within GFF862 at 170.210 kb on - strand, within GFF862 at 170.210 kb on - strand, within GFF862 at 170.482 kb on + strand at 170.482 kb on + strand at 170.482 kb on + strand at 170.482 kb on + strand at 170.482 kb on + strand at 170.483 kb on - strand at 170.649 kb on + strand, within GFF863 at 170.650 kb on - strand, within GFF863 at 170.650 kb on - strand, within GFF863 at 171.099 kb on + strand, within GFF863 at 171.099 kb on + strand, within GFF863 at 171.099 kb on + strand, within GFF863 at 171.099 kb on + strand, within GFF863 at 171.100 kb on - strand, within GFF863 at 171.100 kb on - strand, within GFF863 at 171.100 kb on - strand, within GFF863 at 171.100 kb on - strand, within GFF863 at 171.303 kb on + strand, within GFF863 at 171.304 kb on - strand, within GFF863 at 171.304 kb on - strand, within GFF863
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 169,331 + GFF861 0.81 +0.4 169,331 + GFF861 0.81 +0.0 169,332 - GFF861 0.81 -0.4 169,337 + GFF861 0.82 +0.0 169,337 + GFF861 0.82 +0.0 169,337 + GFF861 0.82 -1.0 169,338 - GFF861 0.82 -0.6 169,343 + GFF861 0.82 -0.3 169,343 + GFF861 0.82 -0.4 169,344 - GFF861 0.82 +1.4 169,344 - GFF861 0.82 +0.7 169,344 - GFF861 0.82 +0.7 169,344 - GFF861 0.82 +0.1 169,344 - GFF861 0.82 -0.4 169,377 - GFF861 0.84 -0.3 169,574 - -0.0 169,696 - +0.1 169,696 - +0.6 169,759 + GFF862 0.14 +0.7 169,760 - GFF862 0.15 +0.4 169,760 - GFF862 0.15 +0.8 170,210 - GFF862 0.64 +1.4 170,210 - GFF862 0.64 -0.7 170,482 + +0.4 170,482 + -0.7 170,482 + -0.5 170,482 + +0.6 170,482 + +0.0 170,483 - +0.7 170,649 + GFF863 0.12 -0.9 170,650 - GFF863 0.12 +0.1 170,650 - GFF863 0.12 -0.3 171,099 + GFF863 0.55 +0.4 171,099 + GFF863 0.55 +0.4 171,099 + GFF863 0.55 -0.2 171,099 + GFF863 0.55 +0.3 171,100 - GFF863 0.55 +0.6 171,100 - GFF863 0.55 -1.4 171,100 - GFF863 0.55 -0.4 171,100 - GFF863 0.55 -0.1 171,303 + GFF863 0.75 +0.9 171,304 - GFF863 0.75 +0.3 171,304 - GFF863 0.75 -1.2
Or see this region's nucleotide sequence