Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7360 and GFF7361 are separated by 67 nucleotides GFF7361 and GFF7362 overlap by 4 nucleotides GFF7362 and GFF7363 are separated by 195 nucleotides
GFF7360 - Urea ABC transporter, substrate-binding protein UrtA, at 7,761 to 8,900
GFF7360
GFF7361 - Acyl-coenzyme A thioesterase PaaD (Pse.pu.) (E. coli PaaI), at 8,968 to 9,402
GFF7361
GFF7362 - Enoyl-CoA hydratase (EC 4.2.1.17), at 9,399 to 10,196
GFF7362
GFF7363 - hypothetical protein, at 10,392 to 11,363
GFF7363
Position (kb)
8
9
10 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 8.014 kb on + strand, within GFF7360 at 8.015 kb on - strand, within GFF7360 at 8.015 kb on - strand, within GFF7360 at 8.015 kb on - strand, within GFF7360 at 8.137 kb on + strand, within GFF7360 at 8.137 kb on + strand, within GFF7360 at 8.138 kb on - strand, within GFF7360 at 8.138 kb on - strand, within GFF7360 at 8.197 kb on + strand, within GFF7360 at 8.197 kb on + strand, within GFF7360 at 8.198 kb on - strand, within GFF7360 at 8.363 kb on + strand, within GFF7360 at 8.364 kb on - strand, within GFF7360 at 8.426 kb on - strand, within GFF7360 at 8.627 kb on + strand, within GFF7360 at 8.628 kb on - strand, within GFF7360 at 8.690 kb on - strand, within GFF7360 at 8.694 kb on + strand, within GFF7360 at 8.749 kb on + strand, within GFF7360 at 8.749 kb on + strand, within GFF7360 at 8.843 kb on - strand at 8.913 kb on + strand at 8.914 kb on - strand at 8.917 kb on - strand at 8.969 kb on + strand at 9.059 kb on + strand, within GFF7361 at 9.106 kb on - strand, within GFF7361 at 9.106 kb on - strand, within GFF7361 at 9.106 kb on - strand, within GFF7361 at 9.106 kb on - strand, within GFF7361 at 9.106 kb on - strand, within GFF7361 at 9.106 kb on - strand, within GFF7361 at 9.108 kb on - strand, within GFF7361 at 9.108 kb on - strand, within GFF7361 at 9.469 kb on + strand at 9.937 kb on + strand, within GFF7362 at 9.937 kb on + strand, within GFF7362 at 10.179 kb on + strand at 10.179 kb on + strand at 10.180 kb on - strand at 10.363 kb on - strand at 10.367 kb on - strand at 10.390 kb on + strand at 10.390 kb on + strand at 10.390 kb on + strand at 10.390 kb on + strand at 10.391 kb on - strand at 10.391 kb on - strand at 10.391 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 8,014 + GFF7360 0.22 +0.8 8,015 - GFF7360 0.22 -0.3 8,015 - GFF7360 0.22 -0.6 8,015 - GFF7360 0.22 -0.7 8,137 + GFF7360 0.33 +0.4 8,137 + GFF7360 0.33 -0.1 8,138 - GFF7360 0.33 -0.6 8,138 - GFF7360 0.33 +0.3 8,197 + GFF7360 0.38 -0.2 8,197 + GFF7360 0.38 -0.5 8,198 - GFF7360 0.38 -0.5 8,363 + GFF7360 0.53 -0.1 8,364 - GFF7360 0.53 -1.0 8,426 - GFF7360 0.58 -0.2 8,627 + GFF7360 0.76 +1.0 8,628 - GFF7360 0.76 -1.2 8,690 - GFF7360 0.81 -0.0 8,694 + GFF7360 0.82 +0.2 8,749 + GFF7360 0.87 +0.2 8,749 + GFF7360 0.87 +0.1 8,843 - -1.1 8,913 + -1.4 8,914 - +1.9 8,917 - -0.5 8,969 + -0.1 9,059 + GFF7361 0.21 -1.7 9,106 - GFF7361 0.32 -2.1 9,106 - GFF7361 0.32 -0.8 9,106 - GFF7361 0.32 -0.8 9,106 - GFF7361 0.32 -1.2 9,106 - GFF7361 0.32 -0.5 9,106 - GFF7361 0.32 -0.7 9,108 - GFF7361 0.32 -0.2 9,108 - GFF7361 0.32 -1.0 9,469 + -0.3 9,937 + GFF7362 0.67 +0.3 9,937 + GFF7362 0.67 -0.1 10,179 + +0.0 10,179 + +0.1 10,180 - -0.6 10,363 - -0.1 10,367 - -0.9 10,390 + -0.4 10,390 + -0.1 10,390 + -0.2 10,390 + +0.0 10,391 - +0.9 10,391 - +0.3 10,391 - -0.6
Or see this region's nucleotide sequence