Strain Fitness in Variovorax sp. SCN45 around GFF7361

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7360 and GFF7361 are separated by 67 nucleotidesGFF7361 and GFF7362 overlap by 4 nucleotidesGFF7362 and GFF7363 are separated by 195 nucleotides GFF7360 - Urea ABC transporter, substrate-binding protein UrtA, at 7,761 to 8,900 GFF7360 GFF7361 - Acyl-coenzyme A thioesterase PaaD (Pse.pu.) (E. coli PaaI), at 8,968 to 9,402 GFF7361 GFF7362 - Enoyl-CoA hydratase (EC 4.2.1.17), at 9,399 to 10,196 GFF7362 GFF7363 - hypothetical protein, at 10,392 to 11,363 GFF7363 Position (kb) 8 9 10Strain fitness (log2 ratio) -2 -1 0 1 2at 8.014 kb on + strand, within GFF7360at 8.015 kb on - strand, within GFF7360at 8.015 kb on - strand, within GFF7360at 8.015 kb on - strand, within GFF7360at 8.137 kb on + strand, within GFF7360at 8.137 kb on + strand, within GFF7360at 8.138 kb on - strand, within GFF7360at 8.138 kb on - strand, within GFF7360at 8.197 kb on + strand, within GFF7360at 8.197 kb on + strand, within GFF7360at 8.198 kb on - strand, within GFF7360at 8.363 kb on + strand, within GFF7360at 8.364 kb on - strand, within GFF7360at 8.426 kb on - strand, within GFF7360at 8.627 kb on + strand, within GFF7360at 8.628 kb on - strand, within GFF7360at 8.690 kb on - strand, within GFF7360at 8.694 kb on + strand, within GFF7360at 8.749 kb on + strand, within GFF7360at 8.749 kb on + strand, within GFF7360at 8.843 kb on - strandat 8.913 kb on + strandat 8.914 kb on - strandat 8.917 kb on - strandat 8.969 kb on + strandat 9.059 kb on + strand, within GFF7361at 9.106 kb on - strand, within GFF7361at 9.106 kb on - strand, within GFF7361at 9.106 kb on - strand, within GFF7361at 9.106 kb on - strand, within GFF7361at 9.106 kb on - strand, within GFF7361at 9.106 kb on - strand, within GFF7361at 9.108 kb on - strand, within GFF7361at 9.108 kb on - strand, within GFF7361at 9.469 kb on + strandat 9.937 kb on + strand, within GFF7362at 9.937 kb on + strand, within GFF7362at 10.179 kb on + strandat 10.179 kb on + strandat 10.180 kb on - strandat 10.363 kb on - strandat 10.367 kb on - strandat 10.390 kb on + strandat 10.390 kb on + strandat 10.390 kb on + strandat 10.390 kb on + strandat 10.391 kb on - strandat 10.391 kb on - strandat 10.391 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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8,014 + GFF7360 0.22 +0.8
8,015 - GFF7360 0.22 -0.3
8,015 - GFF7360 0.22 -0.6
8,015 - GFF7360 0.22 -0.7
8,137 + GFF7360 0.33 +0.4
8,137 + GFF7360 0.33 -0.1
8,138 - GFF7360 0.33 -0.6
8,138 - GFF7360 0.33 +0.3
8,197 + GFF7360 0.38 -0.2
8,197 + GFF7360 0.38 -0.5
8,198 - GFF7360 0.38 -0.5
8,363 + GFF7360 0.53 -0.1
8,364 - GFF7360 0.53 -1.0
8,426 - GFF7360 0.58 -0.2
8,627 + GFF7360 0.76 +1.0
8,628 - GFF7360 0.76 -1.2
8,690 - GFF7360 0.81 -0.0
8,694 + GFF7360 0.82 +0.2
8,749 + GFF7360 0.87 +0.2
8,749 + GFF7360 0.87 +0.1
8,843 - -1.1
8,913 + -1.4
8,914 - +1.9
8,917 - -0.5
8,969 + -0.1
9,059 + GFF7361 0.21 -1.7
9,106 - GFF7361 0.32 -2.1
9,106 - GFF7361 0.32 -0.8
9,106 - GFF7361 0.32 -0.8
9,106 - GFF7361 0.32 -1.2
9,106 - GFF7361 0.32 -0.5
9,106 - GFF7361 0.32 -0.7
9,108 - GFF7361 0.32 -0.2
9,108 - GFF7361 0.32 -1.0
9,469 + -0.3
9,937 + GFF7362 0.67 +0.3
9,937 + GFF7362 0.67 -0.1
10,179 + +0.0
10,179 + +0.1
10,180 - -0.6
10,363 - -0.1
10,367 - -0.9
10,390 + -0.4
10,390 + -0.1
10,390 + -0.2
10,390 + +0.0
10,391 - +0.9
10,391 - +0.3
10,391 - -0.6

Or see this region's nucleotide sequence