Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7345 and GFF7346 overlap by 4 nucleotides GFF7346 and GFF7347 are separated by 3 nucleotides GFF7347 and GFF7348 are separated by 56 nucleotides GFF7348 and GFF7349 are separated by 63 nucleotides
GFF7345 - Periplasmic aromatic aldehyde oxidoreductase, iron-sulfur subunit YagT, at 13,359 to 14,015
GFF7345
GFF7346 - Periplasmic aromatic aldehyde oxidoreductase, FAD binding subunit YagS, at 14,012 to 14,962
GFF7346
GFF7347 - Periplasmic aromatic aldehyde oxidoreductase, molybdenum binding subunit YagR, at 14,966 to 17,161
GFF7347
GFF7348 - Oxidoreductase, aldo/keto reductase family, at 17,218 to 18,069
GFF7348
GFF7349 - no description, at 18,133 to 18,264
GFF7349
Position (kb) 14
15
16
17
18 Strain fitness (log2 ratio) -1
0
1
2
3 at 14.373 kb on - strand, within GFF7346 at 14.693 kb on + strand, within GFF7346 at 14.703 kb on + strand, within GFF7346 at 14.703 kb on + strand, within GFF7346 at 14.704 kb on - strand, within GFF7346 at 14.704 kb on - strand, within GFF7346 at 15.074 kb on + strand at 15.365 kb on + strand, within GFF7347 at 15.497 kb on + strand, within GFF7347 at 15.497 kb on + strand, within GFF7347 at 15.498 kb on - strand, within GFF7347 at 15.502 kb on + strand, within GFF7347 at 16.377 kb on - strand, within GFF7347 at 16.377 kb on - strand, within GFF7347 at 16.517 kb on + strand, within GFF7347 at 16.517 kb on + strand, within GFF7347 at 16.518 kb on - strand, within GFF7347 at 16.518 kb on - strand, within GFF7347 at 16.700 kb on + strand, within GFF7347 at 16.751 kb on + strand, within GFF7347 at 17.108 kb on + strand at 17.130 kb on + strand at 17.131 kb on - strand at 17.515 kb on + strand, within GFF7348 at 17.516 kb on - strand, within GFF7348 at 17.690 kb on + strand, within GFF7348
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 14,373 - GFF7346 0.38 +0.4 14,693 + GFF7346 0.72 -1.0 14,703 + GFF7346 0.73 -0.0 14,703 + GFF7346 0.73 +0.4 14,704 - GFF7346 0.73 +0.5 14,704 - GFF7346 0.73 -0.7 15,074 + -0.3 15,365 + GFF7347 0.18 -0.9 15,497 + GFF7347 0.24 -0.5 15,497 + GFF7347 0.24 -0.6 15,498 - GFF7347 0.24 +0.2 15,502 + GFF7347 0.24 -0.9 16,377 - GFF7347 0.64 +0.4 16,377 - GFF7347 0.64 -0.3 16,517 + GFF7347 0.71 -0.6 16,517 + GFF7347 0.71 +0.1 16,518 - GFF7347 0.71 -0.6 16,518 - GFF7347 0.71 -0.2 16,700 + GFF7347 0.79 -0.2 16,751 + GFF7347 0.81 -0.9 17,108 + -0.7 17,130 + +2.8 17,131 - -0.1 17,515 + GFF7348 0.35 -0.0 17,516 - GFF7348 0.35 +0.2 17,690 + GFF7348 0.55 +0.4
Or see this region's nucleotide sequence