Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7334 and GFF7335 are separated by 139 nucleotides GFF7335 and GFF7336 are separated by 41 nucleotides
GFF7334 - Nucleoside-diphosphate-sugar epimerases, at 3,755 to 4,717
GFF7334
GFF7335 - no description, at 4,857 to 5,003
GFF7335
GFF7336 - Alkanesulfonate utilization operon LysR-family regulator Cbl, at 5,045 to 5,980
GFF7336
Position (kb) 4
5
6 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3.977 kb on + strand, within GFF7334 at 3.978 kb on - strand, within GFF7334 at 4.100 kb on + strand, within GFF7334 at 4.100 kb on + strand, within GFF7334 at 4.100 kb on + strand, within GFF7334 at 4.100 kb on + strand, within GFF7334 at 4.100 kb on + strand, within GFF7334 at 4.101 kb on - strand, within GFF7334 at 4.101 kb on - strand, within GFF7334 at 4.101 kb on - strand, within GFF7334 at 4.101 kb on - strand, within GFF7334 at 4.101 kb on - strand, within GFF7334 at 4.101 kb on - strand, within GFF7334 at 4.101 kb on - strand, within GFF7334 at 4.106 kb on + strand, within GFF7334 at 4.466 kb on + strand, within GFF7334 at 4.518 kb on - strand, within GFF7334 at 4.670 kb on + strand at 4.670 kb on + strand at 4.671 kb on - strand at 4.758 kb on - strand at 4.771 kb on + strand at 4.771 kb on + strand at 4.828 kb on + strand at 4.829 kb on - strand at 4.968 kb on + strand, within GFF7335 at 5.013 kb on + strand at 5.047 kb on - strand at 5.124 kb on + strand at 5.125 kb on - strand at 5.130 kb on + strand at 5.130 kb on + strand at 5.130 kb on + strand at 5.131 kb on - strand at 5.131 kb on - strand at 5.131 kb on - strand at 5.281 kb on - strand, within GFF7336 at 5.389 kb on - strand, within GFF7336 at 5.721 kb on + strand, within GFF7336 at 5.722 kb on - strand, within GFF7336
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 3,977 + GFF7334 0.23 -0.2 3,978 - GFF7334 0.23 -0.9 4,100 + GFF7334 0.36 -0.1 4,100 + GFF7334 0.36 -0.2 4,100 + GFF7334 0.36 -0.3 4,100 + GFF7334 0.36 +0.3 4,100 + GFF7334 0.36 +1.8 4,101 - GFF7334 0.36 -0.1 4,101 - GFF7334 0.36 -0.7 4,101 - GFF7334 0.36 -0.2 4,101 - GFF7334 0.36 +0.0 4,101 - GFF7334 0.36 -0.2 4,101 - GFF7334 0.36 -1.7 4,101 - GFF7334 0.36 -0.0 4,106 + GFF7334 0.36 +0.2 4,466 + GFF7334 0.74 -0.5 4,518 - GFF7334 0.79 -1.8 4,670 + +0.2 4,670 + +0.7 4,671 - +0.6 4,758 - -1.8 4,771 + +0.7 4,771 + +0.4 4,828 + +0.5 4,829 - +0.8 4,968 + GFF7335 0.76 -1.1 5,013 + +0.8 5,047 - -0.5 5,124 + +0.2 5,125 - -0.5 5,130 + -0.2 5,130 + -0.6 5,130 + -0.0 5,131 - -0.0 5,131 - +1.8 5,131 - +2.3 5,281 - GFF7336 0.25 +0.6 5,389 - GFF7336 0.37 -0.4 5,721 + GFF7336 0.72 -1.6 5,722 - GFF7336 0.72 +0.2
Or see this region's nucleotide sequence