Strain Fitness in Variovorax sp. SCN45 around GFF7289

Experiment: Community=Locust bean gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=1
6,996	+		GFF7288	0.55	-0.7
6,996	+		GFF7288	0.55	-0.3
6,997	-		GFF7288	0.55	-0.8
7,005	+		GFF7288	0.56	-1.7
7,005	+		GFF7288	0.56	-0.1
7,005	+		GFF7288	0.56	-0.4
7,005	+		GFF7288	0.56	-0.2
7,006	-		GFF7288	0.56	-1.5
7,006	-		GFF7288	0.56	+0.6
7,006	-		GFF7288	0.56	-0.8
7,095	+		GFF7288	0.61	+2.2
7,096	-		GFF7288	0.61	-0.1
7,149	+		GFF7288	0.64	+0.6
7,149	+		GFF7288	0.64	+0.9
7,150	-		GFF7288	0.64	-0.5
7,177	-		GFF7288	0.66	-0.5
7,270	-		GFF7288	0.72	-0.3
7,513	-		GFF7288	0.87	-0.6
7,513	-		GFF7288	0.87	+0.3
7,513	-		GFF7288	0.87	-0.9
7,513	-		GFF7288	0.87	+0.1
7,522	-		GFF7288	0.87	-0.8
7,581	+				-0.5
7,673	-				-1.9
7,729	-				+1.0
8,477	+		GFF7289	0.79	-2.4
8,477	+		GFF7289	0.79	-0.4
8,478	-		GFF7289	0.79	+0.1
8,577	-				+0.8
8,658	-				-0.7
8,731	+		GFF7290	0.14	-0.7
8,731	+		GFF7290	0.14	-0.3
8,731	+		GFF7290	0.14	+0.6
8,732	-		GFF7290	0.14	-0.8
8,858	-		GFF7290	0.31	-0.3
9,256	+		GFF7290	0.84	-0.6
9,256	+		GFF7290	0.84	+0.0
9,256	+		GFF7290	0.84	-0.3
9,256	+		GFF7290	0.84	-0.0
9,256	+		GFF7290	0.84	-0.3
9,256	+		GFF7290	0.84	+1.0
9,256	+		GFF7290	0.84	-0.4
9,256	+		GFF7290	0.84	-0.3
9,256	+		GFF7290	0.84	+0.1
9,256	+		GFF7290	0.84	-1.0
9,256	+		GFF7290	0.84	-0.1
9,256	+		GFF7290	0.84	-0.1
9,256	+		GFF7290	0.84	-0.6
9,256	+		GFF7290	0.84	+1.8
9,257	-		GFF7290	0.84	-0.5
9,257	-		GFF7290	0.84	+0.5
9,257	-		GFF7290	0.84	+0.4
9,257	-		GFF7290	0.84	-0.7
9,257	-		GFF7290	0.84	-0.8
9,257	-		GFF7290	0.84	-0.1
9,257	-		GFF7290	0.84	-0.2
9,257	-		GFF7290	0.84	+0.9
9,257	-		GFF7290	0.84	+3.4
9,257	-		GFF7290	0.84	-0.4
9,257	-		GFF7290	0.84	+0.0
9,257	-		GFF7290	0.84	+1.1
9,257	-		GFF7290	0.84	-0.5
9,257	-		GFF7290	0.84	-0.1
9,257	-		GFF7290	0.84	+0.7
9,257	-		GFF7290	0.84	-1.0
9,418	+				-0.0
9,418	+				-0.3
9,418	+				-0.1
9,418	+				+2.4
9,419	-				+0.5
9,474	+				-1.4
9,474	+				-1.9
9,474	+				+0.8
9,474	+				-0.4
9,474	+				-0.8
9,475	-				-0.3
9,475	-				-0.9
9,520	-				+1.2
9,525	+				+0.6
9,573	+		GFF7291	0.13	-2.0
9,573	+		GFF7291	0.13	-0.7
9,573	+		GFF7291	0.13	-0.7
9,573	+		GFF7291	0.13	-0.3
9,573	+		GFF7291	0.13	-0.5
9,573	+		GFF7291	0.13	-1.2