Strain Fitness in Variovorax sp. SCN45 around GFF7285

Experiment: Community=Locust bean gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=1
2,017	-				-0.2
2,122	+		GFF7284	0.16	-1.0
2,152	+		GFF7284	0.19	+0.3
2,161	+		GFF7284	0.20	-0.5
2,161	+		GFF7284	0.20	-1.7
2,162	-		GFF7284	0.20	-0.2
2,162	-		GFF7284	0.20	+0.6
2,162	-		GFF7284	0.20	+0.1
2,162	-		GFF7284	0.20	-0.6
2,162	-		GFF7284	0.20	-0.6
2,162	-		GFF7284	0.20	-1.7
2,473	+		GFF7284	0.51	-0.3
2,474	-		GFF7284	0.51	-0.8
2,474	-		GFF7284	0.51	-0.1
2,474	-		GFF7284	0.51	+0.2
2,474	-		GFF7284	0.51	+0.2
2,474	-		GFF7284	0.51	+0.9
2,476	+		GFF7284	0.52	+0.3
2,476	+		GFF7284	0.52	-0.6
2,476	+		GFF7284	0.52	-0.0
2,476	+		GFF7284	0.52	-0.5
2,476	+		GFF7284	0.52	-0.1
2,476	+		GFF7284	0.52	+0.2
2,476	+		GFF7284	0.52	-0.0
2,476	+		GFF7284	0.52	+0.1
2,476	+		GFF7284	0.52	+0.0
2,476	+		GFF7284	0.52	-0.1
2,477	-		GFF7284	0.52	-0.8
2,477	-		GFF7284	0.52	-0.2
2,477	-		GFF7284	0.52	-1.5
2,564	+		GFF7284	0.60	-0.2
2,564	+		GFF7284	0.60	-0.5
2,565	-		GFF7284	0.60	-0.3
2,653	+		GFF7284	0.69	+0.4
2,653	+		GFF7284	0.69	+0.7
2,653	+		GFF7284	0.69	+0.4
2,653	+		GFF7284	0.69	-0.7
2,654	-		GFF7284	0.69	+0.1
2,654	-		GFF7284	0.69	+0.4
2,654	-		GFF7284	0.69	-0.3
2,854	+		GFF7284	0.89	-0.2
2,929	+				-0.2
2,929	+				+0.0
2,929	+				+0.0
2,929	+				-0.7
2,930	-				-0.2
3,204	-		GFF7285	0.26	+1.3
3,254	+		GFF7285	0.32	-0.4
3,254	+		GFF7285	0.32	+0.2
3,254	+		GFF7285	0.32	+0.5
3,255	-		GFF7285	0.32	-1.1
3,255	-		GFF7285	0.32	-0.5
3,255	-		GFF7285	0.32	-0.5
3,255	-		GFF7285	0.32	-0.5
3,255	-		GFF7285	0.32	+0.1
3,494	+		GFF7285	0.58	-0.1
3,494	+		GFF7285	0.58	-0.4
3,494	+		GFF7285	0.58	-0.0
3,494	+		GFF7285	0.58	-0.6
3,495	-		GFF7285	0.58	+0.2
3,495	-		GFF7285	0.58	-0.8
3,542	+		GFF7285	0.64	-0.5
3,542	+		GFF7285	0.64	-1.0
3,542	+		GFF7285	0.64	+0.3
3,542	+		GFF7285	0.64	+0.2
3,543	-		GFF7285	0.64	-0.6
3,543	-		GFF7285	0.64	-1.7
3,870	-				-1.4
4,001	-				+0.2
4,002	+				+0.0
4,002	+				-0.2
4,002	+				+2.1
4,002	+				+0.4
4,002	+				-0.5
4,003	-				-1.9
4,003	-				-0.7
4,003	-				+0.5
4,003	-				-1.3
4,003	-				+0.2
4,003	-				-1.2
4,684	+		GFF7286	0.66	-0.8
4,684	+		GFF7286	0.66	+0.6
4,684	+		GFF7286	0.66	-0.7
4,684	+		GFF7286	0.66	+0.2
4,684	+		GFF7286	0.66	-1.2
4,684	+		GFF7286	0.66	-0.3
4,685	-		GFF7286	0.66	-0.3
4,685	-		GFF7286	0.66	-0.3
4,747	+		GFF7286	0.72	-0.2