Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7246 and GFF7247 are separated by 11 nucleotides GFF7247 and GFF7248 are separated by 38 nucleotides GFF7248 and GFF7249 overlap by 4 nucleotides GFF7249 and GFF7250 are separated by 95 nucleotides GFF7250 and GFF7251 are separated by 350 nucleotides
GFF7246 - HtrA protease/chaperone protein, at 26,385 to 27,824
GFF7246
GFF7247 - no description, at 27,836 to 28,369
GFF7247
GFF7248 - no description, at 28,408 to 28,563
GFF7248
GFF7249 - no description, at 28,560 to 28,865
GFF7249
GFF7250 - Putative transposase InsK for insertion sequence element IS150, at 28,961 to 29,134
GFF7250
GFF7251 - Mobile element protein, at 29,485 to 29,748
GFF7251
Position (kb) 28
29 Strain fitness (log2 ratio) -1
0
1
2 at 27.570 kb on + strand, within GFF7246 at 27.570 kb on + strand, within GFF7246 at 27.570 kb on + strand, within GFF7246 at 27.570 kb on + strand, within GFF7246 at 27.571 kb on - strand, within GFF7246 at 27.571 kb on - strand, within GFF7246 at 27.604 kb on + strand, within GFF7246 at 27.744 kb on + strand at 27.744 kb on + strand at 27.745 kb on - strand at 27.745 kb on - strand at 27.748 kb on + strand at 27.748 kb on + strand at 27.749 kb on - strand at 27.749 kb on - strand at 27.816 kb on - strand at 27.927 kb on + strand, within GFF7247 at 27.928 kb on - strand, within GFF7247 at 27.928 kb on - strand, within GFF7247 at 27.928 kb on - strand, within GFF7247 at 28.128 kb on - strand, within GFF7247 at 28.275 kb on - strand, within GFF7247 at 28.427 kb on + strand, within GFF7248 at 28.428 kb on - strand, within GFF7248 at 28.683 kb on + strand, within GFF7249 at 28.841 kb on + strand at 28.863 kb on + strand at 28.864 kb on - strand at 28.864 kb on - strand at 28.897 kb on + strand at 28.898 kb on - strand at 28.907 kb on + strand at 28.907 kb on + strand at 28.954 kb on + strand at 28.955 kb on - strand at 29.054 kb on + strand, within GFF7250 at 29.133 kb on - strand at 29.301 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 27,570 + GFF7246 0.82 +0.4 27,570 + GFF7246 0.82 -0.6 27,570 + GFF7246 0.82 -0.1 27,570 + GFF7246 0.82 -0.5 27,571 - GFF7246 0.82 -0.3 27,571 - GFF7246 0.82 -1.1 27,604 + GFF7246 0.85 +0.6 27,744 + +0.1 27,744 + +2.3 27,745 - -0.5 27,745 - -1.3 27,748 + -0.4 27,748 + -1.3 27,749 - +1.2 27,749 - +0.3 27,816 - +1.1 27,927 + GFF7247 0.17 -0.5 27,928 - GFF7247 0.17 -0.0 27,928 - GFF7247 0.17 -0.5 27,928 - GFF7247 0.17 -0.4 28,128 - GFF7247 0.55 -0.8 28,275 - GFF7247 0.82 +1.7 28,427 + GFF7248 0.12 -0.6 28,428 - GFF7248 0.13 -1.0 28,683 + GFF7249 0.40 -0.0 28,841 + +1.7 28,863 + +0.1 28,864 - -0.5 28,864 - -1.6 28,897 + -1.1 28,898 - +0.4 28,907 + -0.3 28,907 + -0.7 28,954 + -0.7 28,955 - +0.0 29,054 + GFF7250 0.53 -1.4 29,133 - -0.4 29,301 - -0.8
Or see this region's nucleotide sequence