Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7237 and GFF7238 are separated by 4 nucleotides GFF7238 and GFF7239 are separated by 126 nucleotides GFF7239 and GFF7240 are separated by 21 nucleotides
GFF7237 - hypothetical protein, at 18,187 to 19,731
GFF7237
GFF7238 - no description, at 19,736 to 20,242
GFF7238
GFF7239 - Repair of Iron Centers di-iron protein, at 20,369 to 20,953
GFF7239
GFF7240 - Polyhydroxyalkanoic acid synthase, at 20,975 to 22,636
GFF7240
Position (kb) 20
21 Strain fitness (log2 ratio) -1
0
1 at 19.941 kb on - strand, within GFF7238 at 20.082 kb on + strand, within GFF7238 at 20.238 kb on + strand at 20.238 kb on + strand at 20.238 kb on + strand at 20.238 kb on + strand at 20.238 kb on + strand at 20.238 kb on + strand at 20.239 kb on - strand at 20.239 kb on - strand at 20.510 kb on + strand, within GFF7239 at 20.511 kb on - strand, within GFF7239 at 20.885 kb on + strand, within GFF7239 at 20.886 kb on - strand, within GFF7239 at 20.886 kb on - strand, within GFF7239 at 20.886 kb on - strand, within GFF7239 at 20.907 kb on + strand at 20.907 kb on + strand at 20.908 kb on - strand at 20.991 kb on + strand at 20.991 kb on + strand at 20.991 kb on + strand at 20.991 kb on + strand at 20.991 kb on + strand at 20.991 kb on + strand at 20.991 kb on + strand at 20.992 kb on - strand at 20.992 kb on - strand at 20.992 kb on - strand at 21.156 kb on + strand, within GFF7240 at 21.157 kb on - strand, within GFF7240 at 21.157 kb on - strand, within GFF7240 at 21.157 kb on - strand, within GFF7240 at 21.157 kb on - strand, within GFF7240 at 21.157 kb on - strand, within GFF7240 at 21.291 kb on + strand, within GFF7240 at 21.390 kb on + strand, within GFF7240 at 21.390 kb on + strand, within GFF7240 at 21.390 kb on + strand, within GFF7240 at 21.864 kb on + strand, within GFF7240 at 21.865 kb on - strand, within GFF7240 at 21.865 kb on - strand, within GFF7240 at 21.865 kb on - strand, within GFF7240
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 19,941 - GFF7238 0.40 +0.9 20,082 + GFF7238 0.68 -0.2 20,238 + -0.7 20,238 + -0.1 20,238 + +1.4 20,238 + +0.4 20,238 + +0.4 20,238 + +0.1 20,239 - -1.1 20,239 - +0.1 20,510 + GFF7239 0.24 -0.5 20,511 - GFF7239 0.24 -0.1 20,885 + GFF7239 0.88 -0.3 20,886 - GFF7239 0.88 -1.5 20,886 - GFF7239 0.88 -1.2 20,886 - GFF7239 0.88 -0.6 20,907 + +0.1 20,907 + +0.2 20,908 - -1.1 20,991 + +0.6 20,991 + +0.2 20,991 + -0.5 20,991 + +1.3 20,991 + -0.1 20,991 + -0.3 20,991 + -0.8 20,992 - -0.0 20,992 - -0.1 20,992 - -0.2 21,156 + GFF7240 0.11 -0.9 21,157 - GFF7240 0.11 +0.3 21,157 - GFF7240 0.11 -0.1 21,157 - GFF7240 0.11 -0.5 21,157 - GFF7240 0.11 -0.2 21,157 - GFF7240 0.11 -1.1 21,291 + GFF7240 0.19 +0.4 21,390 + GFF7240 0.25 +0.4 21,390 + GFF7240 0.25 -0.3 21,390 + GFF7240 0.25 +0.3 21,864 + GFF7240 0.53 -0.5 21,865 - GFF7240 0.54 -0.1 21,865 - GFF7240 0.54 -0.6 21,865 - GFF7240 0.54 -0.5
Or see this region's nucleotide sequence