Strain Fitness in Variovorax sp. SCN45 around GFF7184

Experiment: Community=Locust bean gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=1
940	-		GFF7183	0.12	-0.4
1,027	-		GFF7183	0.25	-0.4
1,036	-		GFF7183	0.26	-0.5
1,077	+		GFF7183	0.32	-0.8
1,078	-		GFF7183	0.32	-0.1
1,078	-		GFF7183	0.32	-0.0
1,086	+		GFF7183	0.34	-0.3
1,221	+		GFF7183	0.54	-1.0
1,524	-				-1.0
1,524	-				-0.6
1,768	-				-0.0
1,804	-				-0.3
1,804	-				-1.0
1,804	-				-0.4
1,978	-				-0.2
1,988	+		GFF7184	0.11	-2.3
1,989	-		GFF7184	0.11	-0.8
2,118	+		GFF7184	0.34	-0.9
2,225	-		GFF7184	0.54	-0.7
2,225	-		GFF7184	0.54	-0.2
2,671	-				-0.7
2,671	-				-1.8
2,699	-				-0.3
2,706	+				+0.0
2,707	-				+1.3
2,707	-				-0.3
2,707	-				-0.2
2,745	+				-0.3
2,909	+				-0.0
2,910	-				-0.2
2,910	-				-0.4
2,910	-				-0.4
2,910	-				-0.9
3,030	-				-0.0
3,082	+				-0.6
3,099	+				+0.7
3,099	+				-0.2
3,297	+		GFF7185	0.54	-0.6
3,297	+		GFF7185	0.54	+1.7
3,298	-		GFF7185	0.54	+1.1
3,298	-		GFF7185	0.54	+0.7
3,300	-		GFF7185	0.55	+0.0
3,396	+		GFF7185	0.83	-0.2
3,398	+		GFF7185	0.84	+0.3
3,399	-		GFF7185	0.84	+0.9