Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7170 and GFF7171 are separated by 112 nucleotides GFF7171 and GFF7172 overlap by 14 nucleotides
GFF7170 - D-malate dehydrogenase [decarboxylating] (EC 1.1.1.83), at 33,949 to 35,040
GFF7170
GFF7171 - Transcriptional regulator DmlR, LysR family, at 35,153 to 36,091
GFF7171
GFF7172 - Manganese transport protein MntH, at 36,078 to 37,403
GFF7172
Position (kb) 35
36
37 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 34.625 kb on + strand, within GFF7170 at 34.625 kb on + strand, within GFF7170 at 34.626 kb on - strand, within GFF7170 at 34.737 kb on - strand, within GFF7170 at 34.848 kb on + strand, within GFF7170 at 34.889 kb on + strand, within GFF7170 at 34.889 kb on + strand, within GFF7170 at 34.890 kb on - strand, within GFF7170 at 35.030 kb on + strand at 35.030 kb on + strand at 35.030 kb on + strand at 35.030 kb on + strand at 35.030 kb on + strand at 35.030 kb on + strand at 35.030 kb on + strand at 35.030 kb on + strand at 35.030 kb on + strand at 35.030 kb on + strand at 35.030 kb on + strand at 35.031 kb on - strand at 35.031 kb on - strand at 35.031 kb on - strand at 35.031 kb on - strand at 35.031 kb on - strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.077 kb on - strand at 35.077 kb on - strand at 35.077 kb on - strand at 35.077 kb on - strand at 35.077 kb on - strand at 35.077 kb on - strand at 35.123 kb on + strand at 35.124 kb on - strand at 35.124 kb on - strand at 35.124 kb on - strand at 35.124 kb on - strand at 35.354 kb on + strand, within GFF7171 at 35.354 kb on + strand, within GFF7171 at 35.354 kb on + strand, within GFF7171 at 35.354 kb on + strand, within GFF7171 at 35.354 kb on + strand, within GFF7171 at 35.355 kb on - strand, within GFF7171 at 35.355 kb on - strand, within GFF7171 at 35.355 kb on - strand, within GFF7171 at 35.355 kb on - strand, within GFF7171 at 35.355 kb on - strand, within GFF7171 at 35.355 kb on - strand, within GFF7171 at 35.355 kb on - strand, within GFF7171 at 35.672 kb on + strand, within GFF7171 at 35.672 kb on + strand, within GFF7171 at 35.673 kb on - strand, within GFF7171 at 35.673 kb on - strand, within GFF7171 at 35.756 kb on + strand, within GFF7171 at 35.757 kb on - strand, within GFF7171 at 35.757 kb on - strand, within GFF7171 at 35.889 kb on + strand, within GFF7171 at 35.890 kb on - strand, within GFF7171 at 35.890 kb on - strand, within GFF7171 at 35.890 kb on - strand, within GFF7171 at 35.915 kb on + strand, within GFF7171 at 35.915 kb on + strand, within GFF7171 at 35.915 kb on + strand, within GFF7171 at 35.916 kb on - strand, within GFF7171 at 35.954 kb on + strand, within GFF7171 at 35.954 kb on + strand, within GFF7171 at 35.955 kb on - strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.979 kb on - strand, within GFF7171 at 35.979 kb on - strand, within GFF7171 at 35.979 kb on - strand, within GFF7171 at 35.979 kb on - strand, within GFF7171 at 35.979 kb on - strand, within GFF7171 at 35.979 kb on - strand, within GFF7171 at 35.979 kb on - strand, within GFF7171 at 35.979 kb on - strand, within GFF7171 at 35.979 kb on - strand, within GFF7171 at 36.709 kb on + strand, within GFF7172 at 36.709 kb on + strand, within GFF7172 at 36.709 kb on + strand, within GFF7172 at 36.710 kb on - strand, within GFF7172 at 36.710 kb on - strand, within GFF7172 at 36.710 kb on - strand, within GFF7172 at 36.710 kb on - strand, within GFF7172 at 36.710 kb on - strand, within GFF7172 at 36.758 kb on - strand, within GFF7172 at 37.090 kb on + strand, within GFF7172 at 37.091 kb on - strand, within GFF7172
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 34,625 + GFF7170 0.62 -0.1 34,625 + GFF7170 0.62 -0.5 34,626 - GFF7170 0.62 -0.7 34,737 - GFF7170 0.72 +0.9 34,848 + GFF7170 0.82 +0.1 34,889 + GFF7170 0.86 -0.7 34,889 + GFF7170 0.86 -1.1 34,890 - GFF7170 0.86 -0.3 35,030 + -0.9 35,030 + -1.4 35,030 + +0.0 35,030 + -0.7 35,030 + -0.7 35,030 + +0.8 35,030 + -1.1 35,030 + -1.9 35,030 + -1.6 35,030 + -0.4 35,030 + +1.9 35,031 - +0.5 35,031 - -0.2 35,031 - -1.0 35,031 - -0.4 35,031 - -0.7 35,076 + -0.2 35,076 + +0.3 35,076 + +0.1 35,076 + -2.5 35,076 + -1.5 35,076 + -0.5 35,076 + -0.3 35,076 + -0.3 35,076 + -0.9 35,076 + +1.2 35,076 + +1.2 35,076 + -1.3 35,076 + +0.2 35,076 + +0.5 35,076 + -0.6 35,076 + -0.6 35,077 - +0.2 35,077 - +0.1 35,077 - -0.1 35,077 - +0.1 35,077 - -0.8 35,077 - -0.7 35,123 + -0.4 35,124 - +0.0 35,124 - -0.1 35,124 - +1.0 35,124 - -0.3 35,354 + GFF7171 0.21 -0.7 35,354 + GFF7171 0.21 -1.3 35,354 + GFF7171 0.21 -0.7 35,354 + GFF7171 0.21 -1.0 35,354 + GFF7171 0.21 +1.2 35,355 - GFF7171 0.22 +0.1 35,355 - GFF7171 0.22 -2.8 35,355 - GFF7171 0.22 -0.4 35,355 - GFF7171 0.22 +1.9 35,355 - GFF7171 0.22 -0.9 35,355 - GFF7171 0.22 +0.2 35,355 - GFF7171 0.22 -0.6 35,672 + GFF7171 0.55 -0.9 35,672 + GFF7171 0.55 -0.9 35,673 - GFF7171 0.55 -1.6 35,673 - GFF7171 0.55 -0.2 35,756 + GFF7171 0.64 +0.1 35,757 - GFF7171 0.64 +0.5 35,757 - GFF7171 0.64 +0.3 35,889 + GFF7171 0.78 +0.9 35,890 - GFF7171 0.78 -0.6 35,890 - GFF7171 0.78 -0.6 35,890 - GFF7171 0.78 +0.3 35,915 + GFF7171 0.81 -0.6 35,915 + GFF7171 0.81 -0.5 35,915 + GFF7171 0.81 -0.6 35,916 - GFF7171 0.81 -0.7 35,954 + GFF7171 0.85 +0.4 35,954 + GFF7171 0.85 +0.1 35,955 - GFF7171 0.85 -0.6 35,978 + GFF7171 0.88 -0.4 35,978 + GFF7171 0.88 -0.4 35,978 + GFF7171 0.88 +0.3 35,978 + GFF7171 0.88 -1.7 35,978 + GFF7171 0.88 -0.7 35,978 + GFF7171 0.88 -0.5 35,978 + GFF7171 0.88 +0.1 35,978 + GFF7171 0.88 -0.2 35,978 + GFF7171 0.88 -0.5 35,978 + GFF7171 0.88 -0.6 35,978 + GFF7171 0.88 -0.2 35,978 + GFF7171 0.88 -0.3 35,978 + GFF7171 0.88 +0.9 35,979 - GFF7171 0.88 +0.4 35,979 - GFF7171 0.88 -0.6 35,979 - GFF7171 0.88 -1.6 35,979 - GFF7171 0.88 +0.5 35,979 - GFF7171 0.88 -0.3 35,979 - GFF7171 0.88 -1.1 35,979 - GFF7171 0.88 +0.4 35,979 - GFF7171 0.88 -0.7 35,979 - GFF7171 0.88 +0.0 36,709 + GFF7172 0.48 +0.5 36,709 + GFF7172 0.48 -1.8 36,709 + GFF7172 0.48 +0.4 36,710 - GFF7172 0.48 +0.3 36,710 - GFF7172 0.48 -0.5 36,710 - GFF7172 0.48 +0.3 36,710 - GFF7172 0.48 +0.3 36,710 - GFF7172 0.48 -0.1 36,758 - GFF7172 0.51 -0.0 37,090 + GFF7172 0.76 -0.4 37,091 - GFF7172 0.76 -0.1
Or see this region's nucleotide sequence