Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7126 and GFF7127 overlap by 25 nucleotides GFF7127 and GFF7128 are separated by 71 nucleotides GFF7128 and GFF7129 are separated by 113 nucleotides GFF7129 and GFF7130 overlap by 4 nucleotides GFF7130 and GFF7131 are separated by 199 nucleotides
GFF7126 - KEGG: transposase, at 43,845 to 44,285
GFF7126
GFF7127 - Mobile element protein, at 44,261 to 44,611
GFF7127
GFF7128 - Mobile element protein, at 44,683 to 45,138
GFF7128
GFF7129 - Mobile element protein, at 45,252 to 46,085
GFF7129
GFF7130 - Mobile element protein, at 46,082 to 46,387
GFF7130
GFF7131 - no description, at 46,587 to 46,970
GFF7131
Position (kb) 45
46
47 Strain fitness (log2 ratio) -2
-1
0
1
2 at 44.291 kb on + strand at 44.291 kb on + strand at 44.390 kb on + strand, within GFF7127 at 44.390 kb on + strand, within GFF7127 at 44.391 kb on - strand, within GFF7127 at 44.391 kb on - strand, within GFF7127 at 44.391 kb on - strand, within GFF7127 at 44.391 kb on - strand, within GFF7127 at 44.391 kb on - strand, within GFF7127 at 44.391 kb on - strand, within GFF7127 at 44.391 kb on - strand, within GFF7127 at 44.680 kb on - strand at 44.680 kb on - strand at 44.680 kb on - strand at 44.680 kb on - strand at 45.234 kb on + strand at 45.235 kb on - strand at 45.253 kb on + strand at 45.292 kb on + strand at 45.292 kb on + strand at 45.293 kb on - strand at 45.347 kb on - strand, within GFF7129 at 45.358 kb on + strand, within GFF7129 at 45.359 kb on - strand, within GFF7129 at 45.409 kb on + strand, within GFF7129 at 45.410 kb on - strand, within GFF7129 at 45.410 kb on - strand, within GFF7129 at 45.421 kb on + strand, within GFF7129 at 45.691 kb on + strand, within GFF7129 at 45.691 kb on + strand, within GFF7129 at 45.692 kb on - strand, within GFF7129 at 45.692 kb on - strand, within GFF7129 at 45.692 kb on - strand, within GFF7129 at 45.718 kb on + strand, within GFF7129 at 45.718 kb on + strand, within GFF7129 at 45.718 kb on + strand, within GFF7129 at 45.719 kb on - strand, within GFF7129 at 45.719 kb on - strand, within GFF7129 at 45.719 kb on - strand, within GFF7129 at 45.719 kb on - strand, within GFF7129 at 45.778 kb on + strand, within GFF7129 at 45.784 kb on + strand, within GFF7129 at 45.785 kb on - strand, within GFF7129 at 45.785 kb on - strand, within GFF7129 at 45.785 kb on - strand, within GFF7129 at 45.785 kb on - strand, within GFF7129 at 45.830 kb on - strand, within GFF7129 at 46.009 kb on + strand at 46.012 kb on + strand at 46.012 kb on + strand at 46.013 kb on - strand at 46.013 kb on - strand at 46.241 kb on + strand, within GFF7130 at 46.241 kb on + strand, within GFF7130 at 46.242 kb on - strand, within GFF7130 at 46.242 kb on - strand, within GFF7130 at 46.242 kb on - strand, within GFF7130 at 46.242 kb on - strand, within GFF7130 at 46.713 kb on + strand, within GFF7131 at 46.713 kb on + strand, within GFF7131 at 46.717 kb on - strand, within GFF7131 at 46.717 kb on - strand, within GFF7131 at 46.866 kb on + strand, within GFF7131 at 46.866 kb on + strand, within GFF7131 at 46.867 kb on - strand, within GFF7131 at 46.867 kb on - strand, within GFF7131 at 46.987 kb on + strand at 46.987 kb on + strand at 46.987 kb on + strand at 46.988 kb on - strand at 46.988 kb on - strand at 47.023 kb on + strand at 47.024 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 44,291 + +0.3 44,291 + -0.6 44,390 + GFF7127 0.37 -0.9 44,390 + GFF7127 0.37 -0.0 44,391 - GFF7127 0.37 -0.7 44,391 - GFF7127 0.37 -0.0 44,391 - GFF7127 0.37 -0.6 44,391 - GFF7127 0.37 -0.2 44,391 - GFF7127 0.37 +0.1 44,391 - GFF7127 0.37 +0.9 44,391 - GFF7127 0.37 -0.1 44,680 - -1.7 44,680 - -1.0 44,680 - -0.3 44,680 - +1.9 45,234 + -1.0 45,235 - +0.1 45,253 + -0.2 45,292 + -0.6 45,292 + -0.2 45,293 - +0.6 45,347 - GFF7129 0.11 -1.1 45,358 + GFF7129 0.13 -0.7 45,359 - GFF7129 0.13 -1.2 45,409 + GFF7129 0.19 -0.9 45,410 - GFF7129 0.19 -1.7 45,410 - GFF7129 0.19 +0.1 45,421 + GFF7129 0.20 -0.4 45,691 + GFF7129 0.53 -1.3 45,691 + GFF7129 0.53 -0.6 45,692 - GFF7129 0.53 -0.8 45,692 - GFF7129 0.53 -0.8 45,692 - GFF7129 0.53 +0.6 45,718 + GFF7129 0.56 +0.5 45,718 + GFF7129 0.56 +1.0 45,718 + GFF7129 0.56 +0.1 45,719 - GFF7129 0.56 -0.2 45,719 - GFF7129 0.56 -1.1 45,719 - GFF7129 0.56 +0.8 45,719 - GFF7129 0.56 -1.4 45,778 + GFF7129 0.63 -0.7 45,784 + GFF7129 0.64 -0.5 45,785 - GFF7129 0.64 -0.9 45,785 - GFF7129 0.64 -0.7 45,785 - GFF7129 0.64 -0.9 45,785 - GFF7129 0.64 -1.0 45,830 - GFF7129 0.69 +0.4 46,009 + +0.4 46,012 + +0.1 46,012 + -0.1 46,013 - -0.2 46,013 - -0.2 46,241 + GFF7130 0.52 -0.5 46,241 + GFF7130 0.52 +0.9 46,242 - GFF7130 0.52 +0.9 46,242 - GFF7130 0.52 +0.3 46,242 - GFF7130 0.52 +0.5 46,242 - GFF7130 0.52 +1.1 46,713 + GFF7131 0.33 -0.8 46,713 + GFF7131 0.33 -0.2 46,717 - GFF7131 0.34 -0.6 46,717 - GFF7131 0.34 +1.6 46,866 + GFF7131 0.73 -0.4 46,866 + GFF7131 0.73 +1.0 46,867 - GFF7131 0.73 -0.9 46,867 - GFF7131 0.73 -0.4 46,987 + -0.1 46,987 + +0.4 46,987 + -0.6 46,988 - +0.7 46,988 - -1.8 47,023 + +0.7 47,024 - +1.9
Or see this region's nucleotide sequence